Download MendeleyCrystal structure of Oligopeptide ABC transporter, periplasmic oligopeptide-binding (TM1223) from THERMOTOGA MARITIMA at 1.73 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
1VR5
Crystal structure of Oligopeptide ABC transporter, periplasmic oligopeptide-binding (TM1223) from THERMOTOGA MARITIMA at 1.73 A resolution
- DOI: 10.2210/pdb1VR5/pdb
- Classification: PROTEIN TRANSPORT
- Organism(s): Thermotoga maritima MSB8
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2005-02-11 Released: 2005-03-08
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.73 Å
- R-Value Free: 0.182
- R-Value Work: 0.152
- R-Value Observed: 0.153
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| oligopeptide ABC transporter, periplasmic oligopeptide-binding protein | A, B | 547 | Thermotoga maritima MSB8 | Mutation(s): 9 Gene Names: TM1223, TM_1223 |  |
Find proteins for Q9X0V0 (Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)) Explore Q9X0V0 Go to UniProtKB: Q9X0V0 | |||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 6 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EPE Query on EPE | A | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID C8 H18 N2 O4 S JKMHFZQWWAIEOD-UHFFFAOYSA-N |  | Ligand Interaction | |
| EDO Query on EDO | A, B | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | Ligand Interaction | |
| ACT Query on ACT | A, B | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | Ligand Interaction | |
| FMT Query on FMT | A | FORMIC ACID C H2 O2 BDAGIHXWWSANSR-UHFFFAOYSA-N |  | Ligand Interaction | |
| CL Query on CL | A, B | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | Ligand Interaction | |
| NA Query on NA | A, B | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A,B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.73 Å
- R-Value Free: 0.182
- R-Value Work: 0.152
- R-Value Observed: 0.153
- Space Group: P 21 21 2
- Diffraction Data DOI: 10.18430/M31VR5 Protein Diffraction
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 140.03 | α = 90 |
| b = 96.64 | β = 90 |
| c = 115.78 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XDS | data scaling |
| SCALA | data scaling |
| SHELXD | phasing |
| SHARP | phasing |
| REFMAC | refinement |
| XDS | data reduction |
| CCP4 | data scaling |
Entry History
Deposition Data
- Deposited Date: 2005-02-11
- Released Date: 2005-03-08 Deposition Author(s): Joint Center for Structural Genomics (JCSG)
