Download MendeleyCrystal structure of Aminotransferase, putative (TM1131) from Thermotoga maritima at 1.82 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
1VP4
Crystal structure of a putative aminotransferase (tm1131) from thermotoga maritima msb8 at 1.82 A resolution
- DOI: 10.2210/pdb1VP4/pdb
- Classification: TRANSFERASE
- Organism(s): Thermotoga maritima MSB8
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2004-10-08 Released: 2004-10-26
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.82 Å
- R-Value Free: 0.203
- R-Value Work: 0.179
- R-Value Observed: 0.180
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| aminotransferase, putative | A, B | 425 | Thermotoga maritima MSB8 | Mutation(s): 8 Gene Names: TM1131, TM_1131 |  |
Find proteins for Q9X0L5 (Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)) Explore Q9X0L5 Go to UniProtKB: Q9X0L5 | |||||
Protein Feature ViewExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PLP Query on PLP | A, B | PYRIDOXAL-5'-PHOSPHATE C8 H10 N O6 P NGVDGCNFYWLIFO-UHFFFAOYSA-N |  | Ligand Interaction | |
| EDO Query on EDO | A, B | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | Ligand Interaction | |
| FMT Query on FMT | A, B | FORMIC ACID C H2 O2 BDAGIHXWWSANSR-UHFFFAOYSA-N |  | Ligand Interaction | |
| UNL Query on UNL | A, B | Unknown ligand BDAGIHXWWSANSR-UHFFFAOYSA-N |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A,B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.82 Å
- R-Value Free: 0.203
- R-Value Work: 0.179
- R-Value Observed: 0.180
- Space Group: P 65
- Diffraction Data DOI: 10.18430/M31VP4 Protein Diffraction
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 165.125 | α = 90 |
| b = 165.125 | β = 90 |
| c = 68.701 | γ = 120 |
| Software Name | Purpose |
|---|---|
| XDSauto | data collection |
| SCALA | data scaling |
| SHELX | model building |
| SHARP | phasing |
| REFMAC | refinement |
| XDS | data reduction |
| CCP4 | data scaling |
| SHELX | phasing |
Entry History
Deposition Data
- Deposited Date: 2004-10-08
- Released Date: 2004-10-26 Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History (Full details and data files)
- Version 1.0: 2004-10-26
Type: Initial release - Version 1.1: 2008-04-26
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Advisory, Source and taxonomy, Version format compliance
