Macromolecule Content

Total Structure Weight: 168.81 kDa
Atom Count: 12514
Residue Count: 1459
Unique protein chains: 1

1VJ0

Crystal structure of Alcohol dehydrogenase (TM0436) from Thermotoga maritima at 2.00 A resolution

DOI: 10.2210/pdb1VJ0/pdb

Classification: OXIDOREDUCTASE
Organism(s): Thermotoga maritima
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2003-12-02 Released: 2004-03-02
Deposition Author(s): Joint Center for Structural Genomics (JCSG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.194
R-Value Work: 0.145
R-Value Observed: 0.146

wwPDB Validation 3D Report Full Report

This is version 1.4 of the entry. See complete history.

Literature

Crystal structure of Alcohol dehydrogenase (TM0436) from Thermotoga maritima at 2.00 A resolution

Joint Center for Structural Genomics (JCSG)

To be published.

Macromolecules

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(by identity cutoff) | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
alcohol dehydrogenase, zinc-containing	A, B, C, D	380	Thermotoga maritima	Mutation(s): 0 Gene Names: TM0436 EC: 1.1.1.1
Find proteins for Q9WYR7 (Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)) Explore Q9WYR7 Go to UniProtKB: Q9WYR7
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ZN Query on ZN Download Ideal Coordinates CCD File SDF format, chain E [A] SDF format, chain F [A] SDF format, chain H [B] SDF format, chain I [B] SDF format, chain K [C] SDF format, chain L [C] SDF format, chain N [D] SDF format, chain O [D] MOL2 format, chain E [A] MOL2 format, chain F [A] MOL2 format, chain H [B] MOL2 format, chain I [B] MOL2 format, chain K [C] MOL2 format, chain L [C] MOL2 format, chain N [D] MOL2 format, chain O [D]	A, B, C, D	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Ligand Interaction
UNL Query on UNL Download Ideal Coordinates CCD File SDF format, chain G [A] SDF format, chain J [B] SDF format, chain M [C] SDF format, chain P [D] MOL2 format, chain G [A] MOL2 format, chain J [B] MOL2 format, chain M [C] MOL2 format, chain P [D]	A, B, C, D	Unknown ligand PTFCDOFLOPIGGS-UHFFFAOYSA-N		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.194
R-Value Work: 0.145
R-Value Observed: 0.146
Space Group: P 2₁ 2₁ 2₁
Diffraction Data DOI: 10.18430/M31VJ0 Protein Diffraction

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 92.88	α = 90
b = 104.919	β = 90
c = 161.617	γ = 90

Software Package:

Software Name	Purpose
MOSFLM	data reduction
SCALA	data scaling
MOLREP	phasing
REFMAC	refinement
CCP4	data scaling

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Deposited Date: 2003-12-02
Released Date: 2004-03-02

Deposition Author(s):

Joint Center for Structural Genomics (JCSG)

Revision History

Version 1.0: 2004-03-02
Type: Initial release
Version 1.1: 2008-04-26
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Advisory, Version format compliance
Version 1.3: 2017-10-04
Changes: Refinement description
Version 1.4: 2018-07-18
Changes: Data collection, Database references

RCSB PDB is funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.