Biological Assembly 1  

 3D View: Structure

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 4.02 kDa 
• Atom Count: 280 
• Residue Count: 34 
• Unique protein chains: 1

1QLO

Structure of the active domain of the herpes simplex virus protein ICP47 in water/sodium dodecyl sulfate solution determined by nuclear magnetic resonance spectroscopy

• DOI: 10.2210/pdb1QLO/pdb
• BMRB: 4557

• Classification: MEMBRANE PROTEINS
• Organism(s): Human alphaherpesvirus 1 strain 17
• Expression System: Spodoptera frugiperda
• Mutation(s): No 


• Deposited: 1999-09-09 Released: 1999-12-14 
• Deposition Author(s): Pfaender, R., Neumann, L., Zweckstetter, M., Seger, C., Holak, T.A., Tampe, R.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 40 
• Conformers Submitted: 19 
• Selection Criteria: LEAST RESTRAINT VIOLATION ENERGY 

Literature

The Structure of the Active Domain of the Herpes Simplex Virus Protein Icp47 in Water/Sodium Dodecyl Sulfate Solution Determined by Nuclear Magnetic Resonance Spectroscopy.

Pfaender, R., Neumann, L., Zweckstetter, M., Seger, C., Holak, T.A., Tampe, R.

(1999) Biochemistry 38: 13692

• PubMed: 10521276 
• DOI: 10.1021/bi9909647
• Primary Citation of Related Structures:  
  1QLO


• PubMed Abstract: 
  

ICP47 encoded by herpes simplex virus (HSV) is a key factor in the evasion of cellular immune response against HSV-infected cells. By specific inhibition of the transporter associated with antigen processing (TAP), ICP47 prevents peptide transport into the endoplasmic reticulum and subsequent loading of major histocompatibility complex (MHC) class I molecules. Amino acid residues 3-34 have been identified as the active domain. This domain appeared to be unstructured in aqueous solution, whereas after binding to membranes an alpha-helical conformation was observed. Here, we have analyzed the structure of ICP47(2-34) in a lipidlike environment by nuclear magnetic resonance (NMR) spectroscopy. In micellar solution of deuterated sodium dodecyl sulfate, the viral TAP inhibitor adopts an ordered structure. There are two helical regions extending from residues 4 to 15 and from residues 22 to 32. Arg-16 is found on the C-terminus of the first helix, and Gly-33 serves as a terminator of the second helix. A loop between residues 17 and 21 is also evident in the structure. The relative orientation of the helices toward each other, however, could not be determined due to the paucity of NOEs from residues 18-21.

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Organizational Affiliation: 

Max-Planck-Institut für Biochemie, Martinsried, Germany.

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
HERPES SIMPLEX VIRUS PROTEIN ICP47	A	34	Human alphaherpesvirus 1 strain 17	Mutation(s): 0  Gene Names: US12
Find proteins for P03170 (Human herpesvirus 1 (strain 17)) Explore P03170  Go to UniProtKB:  P03170

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 40 
• Conformers Submitted: 19 
• Selection Criteria: LEAST RESTRAINT VIOLATION ENERGY 
• OLDERADO: 1QLO Olderado

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 1999-09-09 
• Released Date: 1999-12-14 
Deposition Author(s): Pfaender, R., Neumann, L., Zweckstetter, M., Seger, C., Holak, T.A., Tampe, R.

Revision History 

• Version 1.0: 1999-12-14
  Type: Initial release
  
• Version 1.1: 2011-05-08
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2020-01-15
  Changes: Data collection, Other