Biological Assembly 1  

 3D View: Structure | Electron Density

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

 3D View: Structure | Electron Density

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Macromolecule Content

• Total Structure Weight: 130.34 kDa 
• Atom Count: 8179 
• Residue Count: 1076 
• Unique protein chains: 1

1NO7

Structure of the Large Protease Resistant Upper Domain of VP5, the Major Capsid Protein of Herpes Simplex Virus-1

• DOI: 10.2210/pdb1NO7/pdb

• Classification: VIRAL PROTEIN
• Organism(s): Human alphaherpesvirus 1
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2003-01-15 Released: 2004-01-20 
• Deposition Author(s): Bowman, B.R., Baker, M.L., Rixon, F.J., Chiu, W., Quiocho, F.A.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.90 Å
• R-Value Free: 0.289 
• R-Value Work: 0.255 
• R-Value Observed: 0.255 

Literature

Structure of the herpesvirus major capsid protein

Bowman, B.R., Baker, M.L., Rixon, F.J., Chiu, W., Quiocho, F.A.

(2003) EMBO J 22: 757-765

• PubMed: 12574112 
• DOI: 10.1093/emboj/cdg086
• Primary Citation of Related Structures:  
  1NO7


• PubMed Abstract: 
  

Herpes simplex virus-1 (HSV-1) virions are large, complex enveloped particles containing a proteinaceous tegument layer connected to an icosahedral capsid. The major capsid protein, VP5 (149 kDa), makes up both types of capsomere, pentons and hexons. Limited trypsin digestion of VP5 identified a single stable 65 kDa fragment which represents a proposed protein folding nucleus. We report the 2.9 A crystal structure of this fragment and its modeling into an 8.5 A resolution electron cryomicroscopy map of the HSV-1 capsid. The structure, the first for any capsid protein from Herpesviridae, revealed a novel fold, placing herpesviruses outside any of the structurally linked viral groupings. Alterations in the geometrical arrangements of the VP5 subunits in the capsomeres exposes different residues, resulting in the differential association of the tegument and VP26 with the pentons and hexons, respectively. The rearrangements of VP5 subunits required to form both pentavalent and hexavalent capsomeres result in structures that exhibit very different electrostatic properties. These differences may mediate the binding and release of other structural proteins during capsid maturation.

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Organizational Affiliation: 

Verna and Marrs McLean Department of Biochemistry and Molecular Biology, Graduate Program in Structural and Computational Biology, Baylor College of Medicine, Houston, TX 77030, USA.

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Major capsid protein	A, B	604	Human alphaherpesvirus 1	Mutation(s): 0  Gene Names: UL19
Find proteins for P06491 (Human herpesvirus 1 (strain 17)) Explore P06491  Go to UniProtKB:  P06491

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.90 Å
• R-Value Free: 0.289 
• R-Value Work: 0.255 
• R-Value Observed: 0.255 
• Space Group: P 4₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 99.072	α = 90
b = 99.072	β = 90
c = 454.684	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
HKL-2000	data reduction
SCALEPACK	data scaling
CNS	phasing

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2003-01-15 
• Released Date: 2004-01-20 
Deposition Author(s): Bowman, B.R., Baker, M.L., Rixon, F.J., Chiu, W., Quiocho, F.A.

Revision History 

• Version 1.0: 2004-01-20
  Type: Initial release
  
• Version 1.1: 2008-04-29
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance