1L6H

Solution Structure of Plant nsLTP2 purified from Rice (oryza Sativa)


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Submitted: 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Solution structure of plant nonspecific lipid transfer protein-2 from rice (Oryza sativa).

Samuel, D.Liu, Y.J.Cheng, C.S.Lyu, P.C.

(2002) J Biol Chem 277: 35267-35273

  • DOI: 10.1074/jbc.M203113200
  • Primary Citation of Related Structures:  
    1L6H

  • PubMed Abstract: 
  • The three-dimensional structure of rice nonspecific lipid transfer protein (nsLTP2) has been solved for the first time. The structure of nsLTP2 was obtained using 813 distance constraints, 30 hydrogen bond constraints, and 19 dihedral angle constraints. ...

    The three-dimensional structure of rice nonspecific lipid transfer protein (nsLTP2) has been solved for the first time. The structure of nsLTP2 was obtained using 813 distance constraints, 30 hydrogen bond constraints, and 19 dihedral angle constraints. Fifteen of the 50 random simulated annealing structures satisfied all of the constraints and possessed good nonbonded contacts. The novel three-dimensional fold of rice nsLTP2 contains a triangular hydrophobic cavity formed by three prominent helices. The four disulfide bonds required for stabilization of the nsLTP2 structure show a different pattern of cysteine pairing compared with nsLTP1. The C terminus of the protein is very flexible and forms a cap over the hydrophobic cavity. Molecular modeling studies suggested that the hydrophobic cavity could accommodate large molecules with rigid structures, such as sterols. The positively charged residues on the molecular surface of nsLTP2 are structurally similar to other plant defense proteins.


    Related Citations: 
    • Purification and characterization of a novel 7-kDa non-specific lipid transfer protein-2 from rice (Oryza sativa)
      Liu, Y.-J., Samuel, D., Lin, C.-H., Lyu, P.-C.
      (2002) Biochem Biophys Res Commun 294: 535

    Organizational Affiliation

    Department of Life Sciences, National Tsing Hua University, Taiwan 300, China.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Non-Specific Lipid Transfer Protein A69Oryza sativaMutation(s): 0 
Find proteins for Q10ST8 (Oryza sativa subsp. japonica)
Explore Q10ST8 
Go to UniProtKB:  Q10ST8
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Submitted: 
  • OLDERADO: 1L6H Olderado

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

  • Deposited Date: 2002-03-11 
  • Released Date: 2002-10-02 
  • Deposition Author(s): Samuel, D., Lyu, P.-C.

Revision History 

  • Version 1.0: 2002-10-02
    Type: Initial release
  • Version 1.1: 2008-04-28
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance