Biological Assembly 1  

 3D View: Structure | Ligand Interaction

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

 3D View: Structure | Ligand Interaction

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 39.41 kDa 
• Atom Count: 2728 
• Residue Count: 325 
• Unique protein chains: 1

1CGL

Structure of the catalytic domain of fibroblast collagenase complexed with an inhibitor

• DOI: 10.2210/pdb1CGL/pdb

• Classification: HYDROLASE/HYDROLASE INHIBITOR
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 1993-11-17 Released: 1995-02-27 
• Deposition Author(s): Lovejoy, B., Cleasby, A., Hassell, A.M., Longley, K., Luther, M.A., Weigl, D., Mcgeehan, G., Mcelroy, A.B., Drewry, D., Lambert, M.H., Jordan, S.R.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.40 Å
• R-Value Work: 0.186 
• R-Value Observed: 0.186 

Literature

Structure of the catalytic domain of fibroblast collagenase complexed with an inhibitor.

Lovejoy, B., Cleasby, A., Hassell, A.M., Longley, K., Luther, M.A., Weigl, D., McGeehan, G., McElroy, A.B., Drewry, D., Lambert, M.H., Jordan, S.R.

(1994) Science 263: 375-377

• PubMed: 8278810 
• DOI: 10.1126/science.8278810
• Primary Citation of Related Structures:  
  1CGL


• PubMed Abstract: 
  

Collagenase is a zinc-dependent endoproteinase and is a member of the matrix metalloproteinase (MMP) family of enzymes. The MMPs participate in connective tissue remodeling events and aberrant regulation has been associated with several pathologies. The 2.4 angstrom resolution structure of the inhibited enzyme revealed that, in addition to the catalytic zinc, there is a second zinc ion and a calcium ion which play a major role in stabilizing the tertiary structure of collagenase. Despite scant sequence homology, collagenase shares structural homology with two other endoproteinases, bacterial thermolysin and crayfish astacin. The detailed description of protein-inhibitor interactions present in the structure will aid in the design of compounds that selectively inhibit individual members of the MMP family. Such inhibitors will be useful in examining the function of MMPs in pathological processes.

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Related Citations: 

• Preliminary X-Ray Diffraction Studies of Recombinant 19 kDa Human Fibroblast Collagenase
  Hassell, A.M., Anderegg, R.J., Weigl, D., Milburn, M.V., Burkhart, W., Luther, M.A., Jordan, S.R.
  () To be published --: --

• Metal Ion Stabilization of the Conformation of a Recombinant 19 kDa Catalytic Fragment of Human Fibroblast Collagenase
  Lowry, C.L., Mcgeehan, G., Levine III, H.
  (1992) Proteins 12: 42

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Organizational Affiliation: 

Glaxo Research Institute, Research Triangle Park, NC 27709.

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
FIBROBLAST COLLAGENASE	A, B	169	Homo sapiens	Mutation(s): 0  Gene Names: MMP1, CLG EC: 3.4.24.7
Find proteins for P03956 (Homo sapiens) Explore P03956  Go to UniProtKB:  P03956
NIH Common Fund Data Resources
PHAROS  P03956 GTEx  ENSG00000196611

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
0ED	A, B	N-[(1S)-3-{[(benzyloxy)carbonyl]amino}-1-carboxypropyl]-L-leucyl-N-(2-morpholin-4-ylethyl)-L-phenylalaninamide C33 H47 N5 O7 XQSMAYNMHYYWCR-ULNSLHSMSA-N
ZN	A, B	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N
CA	A, B	CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N

External Ligand Annotations
ID	Binding Affinity (Sequence Identity %)
0ED	Ki:  135   nM  Binding MOAD

Biologically Interesting Molecules (External Reference) 1 Unique

Entity ID: 4
ID	Chains	Name	Type/Class	2D Diagram	3D Interactions
PRD_000258 (0ED)	A, B	N-[(1S)-3-{[(benzyloxy)carbonyl]amino}-1-carboxypropyl]-L-leucyl-N-(2-morpholin-4-ylethyl)-L-phenylalaninamide	Peptide-like /  Inhibitor		--

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.40 Å
• R-Value Work: 0.186 
• R-Value Observed: 0.186 
• Space Group: P 6₄

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 78.2	α = 90
b = 78.2	β = 90
c = 87.4	γ = 120

Software Package:

Software Name	Purpose
X-PLOR	model building
X-PLOR	refinement
X-PLOR	phasing

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 1993-11-17 
• Released Date: 1995-02-27 
Deposition Author(s): Lovejoy, B., Cleasby, A., Hassell, A.M., Longley, K., Luther, M.A., Weigl, D., Mcgeehan, G., Mcelroy, A.B., Drewry, D., Lambert, M.H., Jordan, S.R.

Revision History 

• Version 1.0: 1995-02-27
  Type: Initial release
  
• Version 1.1: 2008-05-22
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Atomic model, Database references, Derived calculations, Non-polymer description, Structure summary, Version format compliance
• Version 1.3: 2012-12-12
  Changes: Other
• Version 1.4: 2019-11-20
  Changes: Derived calculations, Other