5A8E

thermostabilised beta1-adrenoceptor with rationally designed inverse agonist 7-methylcyanopindolol bound


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.248
  • R-Value Work: 0.217

Literature

Macromolecules
Sequence Display for 5A8E

Classification: SIGNALING PROTEIN

Total Structure Weight: 38254.05

Macromolecule Entities
Molecule Chains Length Organism Details
BETA1 ADRENERGIC RECEPTOR A 315 Meleagris gallopavo Mutation: R68S, M90V, C116L, I129V, E130W, Y227A, A282L, F327A, F338M, Y343L, C358A
Details: RESIDUES 3-32 AT THE N-TERMINUS AND RESIDUES 244-271 OF THE THIRD INTRACELLULAR LOOP WERE DELETED FROM THE CONSTRUCT. THE CONSTRUCT WAS TRUNCATED AFTER RESIDUE 367 AND A HEXAHIS TAG ADDED.
Gene Name(s): ADRB1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: inferred by homology | Group: ALPHA-HELICAL

Subgroup Name: G Protein-Coupled Receptors (GPCRs)

Protein Name: β1 adrenergic receptor (engineered)


Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
OLC
Query on OLC

A (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate
1-Oleoyl-R-glycerol (Synonym)
C21 H40 O4
RZRNAYUHWVFMIP-GDCKJWNLSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
XTK
Query on XTK

A 4-[(2S)-3-(tert-butylamino)-2-hydroxypropoxy]- 7-methyl-1H-indole-2-carbonitrile
C17 H23 N3 O2
NDCOGBYMSDLXAU-ZDUSSCGKSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MHA
Query on MHA

A (CARBAMOYLMETHYL-CARBOXYMETHYL-AMINO)-ACETIC ACID
N-(2-ACETAMIDO)IMINODIACETIC ACID (Synonym)
C6 H10 N2 O5
QZTKDVCDBIDYMD-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.248
  • R-Value Work: 0.217
  • Space Group: P 21 2 21

Unit Cell:

Length (Å) Angle (°)
a = 53.02 α = 90.00
b = 61.78 β = 90.00
c = 95.56 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-07-15
  • Released Date: 2015-09-30
  • Deposition author(s): Sato, T., Baker, J.G., Warne, T., Brown, G.A., Congreve, M., Leslie, A.G.W., Tate, C.G.

Revision History

  • Version 1_0: 2015-09-30

    Type: Initial release

  • Version 1_1: 2015-11-11

    Type: Database references