5V3G

PRDM9-allele-C ZnF8-13


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.42 Å
  • R-Value Free: 0.225
  • R-Value Work: 0.173

Literature

Macromolecules
Sequence Display for 5V3G

Classification: transferase / dna

Total Structure Weight: 87721.31


Macromolecule Entities
Molecule Chains Length Organism Details
PR domain zinc finger protein 9 A, D, G 174 Homo sapiens EC#: 2.1.1.43 IUBMB
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*TP*GP*AP*CP*CP*CP*CP*AP*GP*TP*GP*AP*GP*CP*GP*TP*TP*GP*CP*CP*C)-3') B, E 21 Homo sapiens
DNA (5'-D(*AP*GP*GP*GP*CP*AP*AP*CP*GP*CP*TP*CP*AP*CP*TP*GP*GP*GP*GP*TP*C)-3') C, F 21 Homo sapiens

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, D, G ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.42 Å
  • R-Value Free: 0.225
  • R-Value Work: 0.173
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 63.15 α = 90.00
b = 123.78 β = 116.07
c = 70.20 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-03-07
  • Released Date: 2017-08-23
  • Deposition author(s): Patel, A., Cheng, X.

Revision History

  • Version 1_0: 2017-08-23

    Type: Initial release

  • Version 1_1: 2017-08-30

    Type: Database references

  • Version 1_2: 2017-10-11

    Type: Database references