5U31

Crystal structure of AacC2c1-sgRNA-8mer substrate DNA ternary complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.89 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.198

Literature

Macromolecules
Sequence Display for 5U31

Classification: HYDROLASE / DNA

Total Structure Weight: 181552.42


Macromolecule Entities
Molecule Chains Length Organism Details
CRISPR-associated endonuclease C2c1 A 1130 Alicyclobacillus acidoterrestris EC#: 3.1 IUBMB
Fragment: CRISPR-associated endonuclease AacC2c1
Mutation: D570A, E848A, D977A
Gene Name(s): c2c1 N007_06525
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
sgRNA B 112 Alicyclobacillus acidoterrestris
Target DNA strand C 28 Homo sapiens
Non-target DNA strand D, E 8 Homo sapiens

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.89 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.198
  • Space Group: I 2 2 2

Unit Cell:

Length (Å) Angle (°)
a = 117.25 α = 90.00
b = 182.15 β = 90.00
c = 216.79 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-12-01
  • Released Date: 2017-01-25
  • Deposition author(s): Yang, H., Gao, P., Rajashankar, K.R., Patel, D.J.

Revision History

  • Version 1_0: 2017-01-25

    Type: Initial release

  • Version 1_1: 2017-02-08

    Type: Structure summary

  • Version 1_2: 2017-09-20

    Type: Author supporting evidence