4N2O

Structure of a novel autonomous cohesin protein from Ruminococcus flavefaciens


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.44 Å
  • R-Value Free: 0.229 
  • R-Value Work: 0.205 
  • R-Value Observed: 0.207 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Structural characterization of a novel autonomous cohesin from Ruminococcus flavefaciens.

Voronov-Goldman, M.Levy-Assaraf, M.Yaniv, O.Wisserman, G.Jindou, S.Borovok, I.Bayer, E.A.Lamed, R.Shimon, L.J.Frolow, F.

(2014) Acta Crystallogr Sect F Struct Biol Cryst Commun 70: 450-456

  • DOI: https://doi.org/10.1107/S2053230X14004051
  • Primary Citation of Related Structures:  
    4N2O

  • PubMed Abstract: 

    Ruminococcus flavefaciens is a cellulolytic bacterium found in the rumen of herbivores and produces one of the most elaborate and variable cellulosome systems. The structure of an R. flavefaciens protein (RfCohG, ZP_06142108), representing a freestanding (non-cellulosomal) type III cohesin module, has been determined. A selenomethionine derivative with a C-terminal histidine tag was crystallized and diffraction data were measured to 2.44 Å resolution. Its structure was determined by single-wavelength anomalous dispersion, revealing eight molecules in the asymmetric unit. RfCohG exhibits the most complex among all known cohesin structures, possessing four α-helical elements and a topographical protuberance on the putative dockerin-binding surface.


  • Organizational Affiliation

    Department of Molecular Microbiology and Biotechnology, Tel Aviv University, Tel Aviv 69978, Israel.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Autonomous cohesin
A, B, C, D, E
A, B, C, D, E, F, G, H
201Ruminococcus flavefaciensMutation(s): 0 
UniProt
Find proteins for W5IDC3 (Ruminococcus flavefaciens)
Explore W5IDC3 
Go to UniProtKB:  W5IDC3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupW5IDC3
Sequence Annotations
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  • Reference Sequence
Small Molecules
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.44 Å
  • R-Value Free: 0.229 
  • R-Value Work: 0.205 
  • R-Value Observed: 0.207 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 116.24α = 90
b = 67.726β = 93.08
c = 258.907γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
SHELXSphasing
PHENIXrefinement
DENZOdata reduction
SCALEPACKdata scaling
X-QUBEdata collection

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2013-12-18
    Type: Initial release
  • Version 1.1: 2014-04-09
    Changes: Database references
  • Version 1.2: 2014-05-14
    Changes: Database references
  • Version 1.3: 2019-07-17
    Changes: Data collection, Derived calculations, Refinement description