X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.62939 ul drop containing 2 ul of SeMet-RfCohG-CH solution (13mg/ml) and 7 ul reservoir solution (0.1 M Sodium Acetate pH 5 and 6% w/v Polyethylene glycol 4000), VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.7855.82

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 116.24α = 90
b = 67.726β = 93.08
c = 258.907γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315rmirrors2009-06-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID290.9762ESRFID29

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.4422.7797.80.140.13247.47285672856-3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT2.44222.7769119367896.810.20660.205370.22889RANDOM46.744
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.920.21-1.323.2
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.031
r_dihedral_angle_4_deg18.68
r_dihedral_angle_3_deg14.351
r_dihedral_angle_1_deg6.291
r_scbond_it4.532
r_mcangle_it4.21
r_mcbond_it2.809
r_mcbond_other2.799
r_angle_other_deg2.166
r_angle_refined_deg1.529
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.031
r_dihedral_angle_4_deg18.68
r_dihedral_angle_3_deg14.351
r_dihedral_angle_1_deg6.291
r_scbond_it4.532
r_mcangle_it4.21
r_mcbond_it2.809
r_mcbond_other2.799
r_angle_other_deg2.166
r_angle_refined_deg1.529
r_chiral_restr0.081
r_bond_refined_d0.011
r_gen_planes_refined0.006
r_bond_other_d0.004
r_gen_planes_other0.004
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcangle_other
r_scbond_other
r_scangle_it
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms11858
Nucleic Acid Atoms
Solvent Atoms383
Heterogen Atoms4

Software

Software
Software NamePurpose
REFMACrefinement
SHELXSphasing
PHENIXrefinement
DENZOdata reduction
SCALEPACKdata scaling
X-QUBEdata collection