Crystal structure of the ROQ domain of human Roquin in complex with the Hmg19 stem-loop RNA
DOI:10.2210/pdb4qil/pdb   NDB ID: NA3039
4QIL
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: RNA Binding Protein/rna
    Structure Weight: 86651.10
    Molecule: Roquin-1
    Polymer: 1 Type: protein Length: 330
    Chains: A, B
    Fragment: ROQ domain (UNP residues 88-407)
    Organism: Homo sapiens
    Gene Names: Gene View for RC3H1 KIAA2025 RNF198
    UniProtKB: Protein Feature View | Search PDB | Q5TC82  
    Molecule: 5'-R(*CP*UP*CP*CP*CP*UP*UP*CP*UP*GP*UP*GP*AP*AP*GP*GP*GP*GP*A)-3'
    Polymer: 2 Type: rna Length: 19
    Chains: C, D
    Fragment: CDE stem-loop
    Details: Hmgxb3 mRNA (Hmg19)
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    4QIK   Crystal structure of the ROQ domain of human Roquin in complex with the TNF23 RNA duplex 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    CA
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    CA Ca
    CALCIUM ION
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:NA3039
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Tan, D.,  Tong, L.

    Deposition:   2014-05-31
    Release:   2014-07-16
    Last Modified (REVDAT):   2014-08-20
     
  •   Revision History    Hide
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    2014-08-20
    Citation
    2014-07-30
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    Resolution[Å]:   2.90
    R-Value: 0.198 (obs.)
    R-Free: 0.251
    Space Group: P 1 21 1
    Unit Cell:
      Length [Å] Angles [°]
    a = 49.60 α = 90.00 
    b = 170.00 β = 97.00 
    c = 51.10 γ = 90.00