Rabbit 40S ribosomal subunit in complex with eIF1 and eIF1A.
DOI:10.2210/pdb4kzy/pdb   NDB ID: NA2502
4KZY
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Ribosome
    Structure Weight: 1255140.96
    Molecule: 40S Ribosomal Protein SA
    Polymer: 1 Type: protein Length: 295
    Chains: A
    Organism: Oryctolagus cuniculus
    Molecule: 40S Ribosomal Protein S3A
    Polymer: 2 Type: protein Length: 264
    Chains: B
    Organism: Oryctolagus cuniculus
    Gene Names: LOC100340708 Gene View for RPS3A
    UniProtKB: Protein Feature View | Search PDB | G1TN72  
    Molecule: 40S Ribosomal Protein S2
    Polymer: 3 Type: protein Length: 278
    Chains: C
    Organism: Oryctolagus cuniculus
    UniProtKB: Protein Feature View | Search PDB | G1U2Z9  
    Molecule: 40S Ribosomal Protein S3
    Polymer: 4 Type: protein Length: 243
    Chains: D
    Organism: Oryctolagus cuniculus
    Gene Name: LOC100356086
    UniProtKB: Protein Feature View | Search PDB | G1TNM3  
    Molecule: 40S Ribosomal Protein S4X
    Polymer: 5 Type: protein Length: 263
    Chains: E
    Organism: Oryctolagus cuniculus
    Gene Name: LOC100355650
    UniProtKB: Protein Feature View | Search PDB | G1TK17  
    Molecule: 40S Ribosomal Protein S5
    Polymer: 6 Type: protein Length: 204
    Chains: F
    Organism: Oryctolagus cuniculus
    Gene Name: Gene View for RPS5
    UniProtKB: Protein Feature View | Search PDB | G1TFM5  
    Molecule: 40S Ribosomal Protein S6
    Polymer: 7 Type: protein Length: 249
    Chains: G
    Organism: Oryctolagus cuniculus
    Gene Name: LOC100348810
    UniProtKB: Protein Feature View | Search PDB | G1TM55  
    Molecule: 40S Ribosomal Protein S7
    Polymer: 8 Type: protein Length: 194
    Chains: H
    Organism: Oryctolagus cuniculus
    Gene Name: Gene View for RPS7
    UniProtKB: Protein Feature View | Search PDB | G1SVB0  
    Molecule: 40S Ribosomal Protein S8
    Polymer: 9 Type: protein Length: 208
    Chains: I
    Organism: Oryctolagus cuniculus
    Gene Name: Gene View for RPS8
    UniProtKB: Protein Feature View | Search PDB | G1TJW1  
    Molecule: 40S Ribosomal Protein S9
    Polymer: 10 Type: protein Length: 194
    Chains: J
    Organism: Oryctolagus cuniculus
    Gene Name: Gene View for RPS9
    UniProtKB: Protein Feature View | Search PDB | B7NZS8  
    Molecule: 40S Ribosomal Protein S10
    Polymer: 11 Type: protein Length: 165
    Chains: K
    Organism: Oryctolagus cuniculus
    Gene Name: Gene View for RPS10
    UniProtKB: Protein Feature View | Search PDB | G1T168  
    Molecule: 40S Ribosomal Protein S11
    Polymer: 12 Type: protein Length: 158
    Chains: L
    Organism: Oryctolagus cuniculus
    Gene Name: LOC100347468
    UniProtKB: Protein Feature View | Search PDB | G1TRM4  
    Molecule: 40S Ribosomal Protein S12
    Polymer: 13 Type: protein Length: 132
    Chains: M
    Organism: Oryctolagus cuniculus
    Gene Name: Gene View for RPS12
    UniProtKB: Protein Feature View | Search PDB | G1SFR8  
    Molecule: 40S Ribosomal Protein S13
    Polymer: 14 Type: protein Length: 151
    Chains: N
    Organism: Oryctolagus cuniculus
    Gene Name: Gene View for RPS13
    UniProtKB: Protein Feature View | Search PDB | G1SP51  
    Molecule: 40S Ribosomal Protein S14
    Polymer: 15 Type: protein Length: 151
    Chains: O
    Organism: Oryctolagus cuniculus
    Gene Name: LOC100343884
    UniProtKB: Protein Feature View | Search PDB | G1U472  
    Molecule: 40S Ribosomal Protein S15
    Polymer: 16 Type: protein Length: 145
    Chains: P
    Organism: Oryctolagus cuniculus
    UniProtKB: Protein Feature View | Search PDB | G1U0Q2  
    Molecule: 40S Ribosomal Protein S16
    Polymer: 17 Type: protein Length: 146
    Chains: Q
    Organism: Oryctolagus cuniculus
    Gene Name: Gene View for RPS16
    UniProtKB: Protein Feature View | Search PDB | G1SGX4  
    Molecule: 40S Ribosomal Protein S17
    Polymer: 18 Type: protein Length: 135
    Chains: R
    Organism: Oryctolagus cuniculus
    Gene Name: LOC100359176
    UniProtKB: Protein Feature View | Search PDB | G1TU13  
    Molecule: 40S Ribosomal Protein S18
    Polymer: 19 Type: protein Length: 152
    Chains: S
    Organism: Oryctolagus cuniculus
    Gene Name: Gene View for RPS18
    UniProtKB: Protein Feature View | Search PDB | G1TPG3  
    Molecule: 40S Ribosomal Protein S19
    Polymer: 20 Type: protein Length: 145
    Chains: T
    Organism: Oryctolagus cuniculus
    Gene Name: Gene View for RPS19
    UniProtKB: Protein Feature View | Search PDB | G1TN62  
    Molecule: 40S Ribosomal Protein S20
    Polymer: 21 Type: protein Length: 119
    Chains: U
    Organism: Oryctolagus cuniculus
    Gene Name: LOC100354063
    UniProtKB: Protein Feature View | Search PDB | G1SIZ2  
    Molecule: 40S Ribosomal Protein S21
    Polymer: 22 Type: protein Length: 83
    Chains: V
    Organism: Oryctolagus cuniculus
    Molecule: 40S Ribosomal Protein S15A
    Polymer: 23 Type: protein Length: 130
    Chains: W
    Organism: Oryctolagus cuniculus
    Gene Name: Gene View for RPS15A
    UniProtKB: Protein Feature View | Search PDB | G1TG89  
    Molecule: 40S Ribosomal Protein S23
    Polymer: 24 Type: protein Length: 143
    Chains: X
    Organism: Oryctolagus cuniculus
    Gene Name: LOC100349244
    UniProtKB: Protein Feature View | Search PDB | G1SZ47  
    Molecule: 40S Ribosomal Protein S24
    Polymer: 25 Type: protein Length: 133
    Chains: Y
    Organism: Oryctolagus cuniculus
    Gene Name: LOC100338405
    UniProtKB: Protein Feature View | Search PDB | G1TS40  
    Molecule: 40S Ribosomal Protein S25
    Polymer: 26 Type: protein Length: 125
    Chains: Z
    Organism: Oryctolagus cuniculus
    Gene Name: Gene View for RPS25
    UniProtKB: Protein Feature View | Search PDB | G1TDB3  
    Molecule: 40S Ribosomal Protein S26
    Polymer: 27 Type: protein Length: 115
    Chains: a
    Organism: Oryctolagus cuniculus
    Gene Name: LOC100346996
    UniProtKB: Protein Feature View | Search PDB | G1TFE8  
    Molecule: 40S Ribosomal Protein S27
    Polymer: 28 Type: protein Length: 84
    Chains: b
    Organism: Oryctolagus cuniculus
    Molecule: 40S Ribosomal Protein S28
    Polymer: 29 Type: protein Length: 69
    Chains: c
    Organism: Oryctolagus cuniculus
    Gene Name: Gene View for RPS28
    UniProtKB: Protein Feature View | Search PDB | G1TIB4  
    Molecule: 40S Ribosomal Protein S29
    Polymer: 30 Type: protein Length: 56
    Chains: d
    Organism: Oryctolagus cuniculus
    Gene Name: Gene View for RPS29
    UniProtKB: Protein Feature View | Search PDB | G1U7M4  
    Molecule: 40S Ribosomal Protein S30
    Polymer: 31 Type: protein Length: 133
    Chains: e
    Organism: Oryctolagus cuniculus
    Gene Name: LOC100354401
    UniProtKB: Protein Feature View | Search PDB | G1T8A2  
    Molecule: 40S Ribosomal Protein S27A
    Polymer: 32 Type: protein Length: 156
    Chains: f
    Organism: Oryctolagus cuniculus
    Molecule: 40S Ribosomal Protein RACK1
    Polymer: 33 Type: protein Length: 317
    Chains: g
    Organism: Oryctolagus cuniculus
    Molecule: 18S Ribosomal RNA
    Polymer: 34 Type: rna Length: 1863
    Chains: i
    Organism: Oryctolagus cuniculus
    Molecule: human initiation factor eIF1
    Polymer: 35 Type: protein Length: 113
    Chains: l
    Organism: Homo sapiens
    Gene Names: Gene View for EIF1 SUI1
    UniProtKB: Protein Feature View | Search PDB | P41567  
    Molecule: human initiation factor eIF1A
    Polymer: 36 Type: protein Length: 144
    Chains: n
    Organism: Homo sapiens
    Gene Names: Gene View for EIF1AX EIF1A EIF4C
    UniProtKB: Protein Feature View | Search PDB | P47813  
     
  •   Structure Validation Hide

    View the full validation report  

     

  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Oryctolagus cuniculus   Taxonomy   Common Name: European rabbit,japanese white rabbit,domestic rabbit,rabbits  
    Polymer: 2
    Scientific Name: Oryctolagus cuniculus   Taxonomy   Common Name: European rabbit,japanese white rabbit,domestic rabbit,rabbits  
    Polymer: 3
    Scientific Name: Oryctolagus cuniculus   Taxonomy   Common Name: European rabbit,japanese white rabbit,domestic rabbit,rabbits  
    Polymer: 4
    Scientific Name: Oryctolagus cuniculus   Taxonomy   Common Name: European rabbit,japanese white rabbit,domestic rabbit,rabbits  
    Polymer: 5
    Scientific Name: Oryctolagus cuniculus   Taxonomy   Common Name: European rabbit,japanese white rabbit,domestic rabbit,rabbits  
    Polymer: 6
    Scientific Name: Oryctolagus cuniculus   Taxonomy   Common Name: European rabbit,japanese white rabbit,domestic rabbit,rabbits  
    Polymer: 7
    Scientific Name: Oryctolagus cuniculus   Taxonomy   Common Name: European rabbit,japanese white rabbit,domestic rabbit,rabbits  
    Polymer: 8
    Scientific Name: Oryctolagus cuniculus   Taxonomy   Common Name: European rabbit,japanese white rabbit,domestic rabbit,rabbits  
    Polymer: 9
    Scientific Name: Oryctolagus cuniculus   Taxonomy   Common Name: European rabbit,japanese white rabbit,domestic rabbit,rabbits  
    Polymer: 10
    Scientific Name: Oryctolagus cuniculus   Taxonomy   Common Name: European rabbit,japanese white rabbit,domestic rabbit,rabbits  
    Polymer: 11
    Scientific Name: Oryctolagus cuniculus   Taxonomy   Common Name: European rabbit,japanese white rabbit,domestic rabbit,rabbits  
    Polymer: 12
    Scientific Name: Oryctolagus cuniculus   Taxonomy   Common Name: European rabbit,japanese white rabbit,domestic rabbit,rabbits  
    Polymer: 13
    Scientific Name: Oryctolagus cuniculus   Taxonomy   Common Name: European rabbit,japanese white rabbit,domestic rabbit,rabbits  
    Polymer: 14
    Scientific Name: Oryctolagus cuniculus   Taxonomy   Common Name: European rabbit,japanese white rabbit,domestic rabbit,rabbits  
    Polymer: 15
    Scientific Name: Oryctolagus cuniculus   Taxonomy   Common Name: European rabbit,japanese white rabbit,domestic rabbit,rabbits  
    Polymer: 16
    Scientific Name: Oryctolagus cuniculus   Taxonomy   Common Name: European rabbit,japanese white rabbit,domestic rabbit,rabbits  
    Polymer: 17
    Scientific Name: Oryctolagus cuniculus   Taxonomy   Common Name: European rabbit,japanese white rabbit,domestic rabbit,rabbits  
    Polymer: 18
    Scientific Name: Oryctolagus cuniculus   Taxonomy   Common Name: European rabbit,japanese white rabbit,domestic rabbit,rabbits  
    Polymer: 19
    Scientific Name: Oryctolagus cuniculus   Taxonomy   Common Name: European rabbit,japanese white rabbit,domestic rabbit,rabbits  
    Polymer: 20
    Scientific Name: Oryctolagus cuniculus   Taxonomy   Common Name: European rabbit,japanese white rabbit,domestic rabbit,rabbits  
    Polymer: 21
    Scientific Name: Oryctolagus cuniculus   Taxonomy   Common Name: European rabbit,japanese white rabbit,domestic rabbit,rabbits  
    Polymer: 22
    Scientific Name: Oryctolagus cuniculus   Taxonomy   Common Name: European rabbit,japanese white rabbit,domestic rabbit,rabbits  
    Polymer: 23
    Scientific Name: Oryctolagus cuniculus   Taxonomy   Common Name: European rabbit,japanese white rabbit,domestic rabbit,rabbits  
    Polymer: 24
    Scientific Name: Oryctolagus cuniculus   Taxonomy   Common Name: European rabbit,japanese white rabbit,domestic rabbit,rabbits  
    Polymer: 25
    Scientific Name: Oryctolagus cuniculus   Taxonomy   Common Name: European rabbit,japanese white rabbit,domestic rabbit,rabbits  
    Polymer: 26
    Scientific Name: Oryctolagus cuniculus   Taxonomy   Common Name: European rabbit,japanese white rabbit,domestic rabbit,rabbits  
    Polymer: 27
    Scientific Name: Oryctolagus cuniculus   Taxonomy   Common Name: European rabbit,japanese white rabbit,domestic rabbit,rabbits  
    Polymer: 28
    Scientific Name: Oryctolagus cuniculus   Taxonomy   Common Name: European rabbit,japanese white rabbit,domestic rabbit,rabbits  
    Polymer: 29
    Scientific Name: Oryctolagus cuniculus   Taxonomy   Common Name: European rabbit,japanese white rabbit,domestic rabbit,rabbits  
    Polymer: 30
    Scientific Name: Oryctolagus cuniculus   Taxonomy   Common Name: European rabbit,japanese white rabbit,domestic rabbit,rabbits  
    Polymer: 31
    Scientific Name: Oryctolagus cuniculus   Taxonomy   Common Name: European rabbit,japanese white rabbit,domestic rabbit,rabbits  
    Polymer: 32
    Scientific Name: Oryctolagus cuniculus   Taxonomy   Common Name: European rabbit,japanese white rabbit,domestic rabbit,rabbits  
    Polymer: 33
    Scientific Name: Oryctolagus cuniculus   Taxonomy   Common Name: European rabbit,japanese white rabbit,domestic rabbit,rabbits  
    Polymer: 34
    Scientific Name: Oryctolagus cuniculus   Taxonomy   Common Name: Rabbit  
    Polymer: 35
    Scientific Name: Homo sapiens   Taxonomy   Expression System: Escherichia coli  
    Polymer: 36
    Scientific Name: Homo sapiens   Taxonomy   Expression System: Escherichia coli  
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:NA2502
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors
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