4BMV

Short-chain dehydrogenase from Sphingobium yanoikuyae in complex with NADPH

Structural Biology Knowledgebase: 4BMV SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.251
  • R-Value Work: 0.234

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4BMV

Classification: OXIDOREDUCTASE

Total Structure Weight: 286454.10

Macromolecule Entities
Molecule Chains Length Organism Details
SHORT-CHAIN DEHYDROGENASE A, B, C..., D, E, F, G, H, I, JA, B, C, D, E, F, G, H, I, J 262 Sphingobium yanoikuyae EC#: 1.1.1.1 IUBMB

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAP
Query on NAP

A, B, C, D, E, F, G, H, I, J NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE (Synonym)
C21 H28 N7 O17 P3
XJLXINKUBYWONI-NNYOXOHSSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.251
  • R-Value Work: 0.234
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 144.91 α = 90.00
b = 86.84 β = 106.36
c = 155.61 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-05-10
  • Released Date: 2014-03-19
  • Deposition author(s): Man, H., Kedziora, K., Lavandera-Garcia, I., Gotor-Fernandez, V., Grogan, G.

Revision History

No revisions since initial release