3ZXE

Crystal structure of Human Galectin-7 in complex with a galactose- benzylphosphate inhibitor

Structural Biology Knowledgebase: 3ZXE SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.67 Å
  • R-Value Free: 0.236
  • R-Value Work: 0.205

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3ZXE

Classification: SUGAR BINDING PROTEIN

Total Structure Weight: 30524.60

Macromolecule Entities
Molecule Chains Length Organism Details
GALECTIN-7 A, B 133 Homo sapiens Fragment: RESIDUES 4-136
Gene Name(s): LGALS7 Gene View PIG1 LGALS7B Gene View

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PGZ
Query on PGZ

A, B METHYL 2-O-[(S)-(BENZYLOXY)(HYDROXY)PHOSPHORYL]- 3-DEOXY-3-{[(4-METHYLPHENYL)CARBONYL]AMINO}- 1-THIO-BETA-D-GALACTOPYRANOSIDE
C22 H28 N O8 P S
IDAWZVIHHBVHNS-QWPXSNKBSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
PGZ N/A in BindingDB
Kd: 450000 nM  BindingMOAD
Kd: 450000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.67 Å
  • R-Value Free: 0.236
  • R-Value Work: 0.205
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 35.29 α = 90.00
b = 53.46 β = 90.00
c = 138.65 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-08-10
  • Released Date: 2011-11-30
  • Deposition author(s): Masuyer, G., Oberg, C.T., Leffler, H., Nilsson, U.J., Acharya, K.R.

Revision History

  • 2012-01-25
    Type: Other | Details: Citation