3HMX

Crystal structure of ustekinumab FAB/IL-12 complex

Structural Biology Knowledgebase: 3HMX SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.303
  • R-Value Work: 0.211

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3HMX

Classification: Cytokine / IMMUNE SYSTEM

Total Structure Weight: 106056.09

Macromolecule Entities
Molecule Chains Length Organism Details
Interleukin-12 subunit beta A 306 Homo sapiens Gene Name(s): IL12B Gene View NKSF2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Interleukin-12 subunit alpha B 197 Homo sapiens Gene Name(s): IL12A Gene View NKSF1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
USTEKINUMAB FAB LIGHT CHAIN L 214 Homo sapiens
USTEKINUMAB FAB HEAVY CHAIN H 226 Homo sapiens

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BMA
Query on BMA

A BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MAN
Query on MAN

A ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.303
  • R-Value Work: 0.211
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 55.09 α = 90.00
b = 116.43 β = 90.00
c = 182.78 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-05-29
  • Released Date: 2010-06-09
  • Deposition author(s): Luo, J.

Revision History

  • 2015-07-22
    Type: Citation | Details: Citation update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4