3B9M

Human serum albumin complexed with myristate, 3'-azido-3'-deoxythymidine (AZT) and salicylic acid

Structural Biology Knowledgebase: 3B9M SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.316
  • R-Value Work: 0.242

Literature

Macromolecules
Sequence Display for 3B9M

Classification: LIPID BINDING PROTEIN

Total Structure Weight: 68485.55

Macromolecule Entities
Molecule Chains Length Organism Details
Serum albumin A 585 Homo sapiens Gene Name(s): ALB Gene View GIG20 GIG42 PRO0903 PRO1708 PRO2044 PRO2619 PRO2675 UNQ696/PRO1341
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AZZ
Query on AZZ

A 3'-azido-3'-deoxythymidine
Azidothymidine; Zidovudine (Synonym)
C10 H13 N5 O4
HBOMLICNUCNMMY-XLPZGREQSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MYR
Query on MYR

A MYRISTIC ACID
C14 H28 O2
TUNFSRHWOTWDNC-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SAL
Query on SAL

A 2-HYDROXYBENZOIC ACID
SALICYLIC ACID (Synonym)
C7 H6 O3
YGSDEFSMJLZEOE-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.316
  • R-Value Work: 0.242
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 181.54 α = 90.00
b = 38.46 β = 104.92
c = 95.37 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-11-05
  • Released Date: 2008-05-27
  • Deposition author(s): Zhu, L., Yang, F., Chen, L., Meehan, E.J., Huang, M.

Revision History

  • 2012-07-18
    Type: Non-polymer description | Details: Update synonym for AZZ.
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4