3VUS

Escherichia coli PgaB N-terminal domain

Structural Biology Knowledgebase: 3VUS SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.205

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3VUS

Classification: HYDROLASE

Total Structure Weight: 62141.24

Macromolecule Entities
Molecule Chains Length Organism Details
Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase A, B 268 Escherichia coli EC#: 3.5.1 IUBMB
Fragment: deacetylase domain, UNP residues 42-309
Gene Name(s): pgaB ycdR b1023 JW5142

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ACT
Query on ACT

A, B ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer
 
JSmol
HG
Query on HG

B MERCURY (II) ION
Hg
BQPIGGFYSBELGY-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.205
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 39.56 α = 90.00
b = 53.11 β = 95.25
c = 144.17 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-07-05
  • Released Date: 2012-11-14
  • Deposition author(s): Nishiyama, T., Noguchi, H., Yoshida, H., Park, S.-Y., Tame, J.R.H.

Revision History

  • 2013-01-16
    Type: Citation | Details: Citation update