Macromolecules
Sequence Display for 3TGX

Classification: CYTOKINE / CYTOKINE RECEPTOR

Total Structure Weight: 344093.09

Macromolecule Entities
Molecule Chains Length Organism Details
Interleukin-21 receptor A, C, E..., G, I, K, M, OA, C, E, G, I, K, M, O 219 Homo sapiens Fragment: Interleukin 21 receptor extracellular domain
Mutation: N78Q, N85Q, N106D, N116Q
Gene Name(s): IL21R Gene View NILR UNQ3121/PRO10273
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Interleukin-21 B, D, F..., H, J, L, N, PB, D, F, H, J, L, N, P 134 Homo sapiens Fragment: unp RESIDUES 23-155
Gene Name(s): IL21 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 7 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, C, E, G, I, K, M, O N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MAN
Query on MAN

A, C, E, G, I, K, M, O ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BMA
Query on BMA

A, C, E, G, I, K, M, O BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FUC
Query on FUC

M ALPHA-L-FUCOSE
C6 H12 O5
SHZGCJCMOBCMKK-SXUWKVJYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FUL
Query on FUL

A, C, E, G, I, K, O BETA-L-FUCOSE
6-DEOXY-BETA-L-GALACTOSE (Synonym)
C6 H12 O5
SHZGCJCMOBCMKK-KGJVWPDLSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, C, E, G, H, I, K, L, M, O SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NI
Query on NI

A, E, G, O NICKEL (II) ION
Ni
VEQPNABPJHWNSG-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.242
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 82.23 α = 90.00
b = 151.12 β = 90.00
c = 364.82 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-08-18
  • Released Date: 2012-02-15
  • Deposition author(s): Hamming, O.J., Kang, L., Svenson, A., Karlsen, J.L., Rahbek-Nielsen, H., Paludan, S.R., Hjort, S.A., Bondensgaard, K., Hartmann, R.

Revision History

  • Version 1_0: 2012-02-15

    Type: Initial release

  • Version 1_1: 2017-09-20

    Type: Advisory, Database references