3OAH

Structural Characterization of the Dual Glycan Binding Adeno-Associated Virus Serotype 6


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.287
  • R-Value Work: 0.275

Literature

Macromolecules
Sequence Display for 3OAH

Classification: VIRUS

Total Structure Weight: 601063.06

Macromolecule Entities
Molecule Chains Length Organism Details
Capsid protein VP1 A 534 Adeno-associated dependoparvovirus a Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
OAH
Query on OAH

A 9-(2-deoxy-5-O-phosphono-alpha-D-threo-pentofuranosyl)- 9H-purin-6-amine
C10 H14 N5 O6 P
KHWCHTKSEGGWEX-QYNIQEEDSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CYT
Query on CYT

A 6-AMINOPYRIMIDIN-2(1H)-ONE
CYTOSINE (Synonym)
C4 H5 N3 O
OPTASPLRGRRNAP-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.287
  • R-Value Work: 0.275
  • Space Group: H 3 2

Unit Cell:

Length (Å) Angle (°)
a = 263.00 α = 90.00
b = 263.00 β = 90.00
c = 609.00 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-08-05
  • Released Date: 2011-03-23
  • Deposition author(s): Ng, R., Agbandje-McKenna, M.

Revision History

  • 2011-07-13
    Type: Version format compliance
  • 2011-10-19
    Type: Other