2Y3Z

Structure of Isopropylmalate dehydrogenase from Thermus thermophilus - apo enzyme

Structural Biology Knowledgebase: 2Y3Z SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.83 Å
  • R-Value Free: 0.197
  • R-Value Work: 0.164

Literature

Macromolecules
Sequence Display for 2Y3Z

Classification: OXIDOREDUCTASE

Total Structure Weight: 40041.20

Macromolecule Entities
Molecule Chains Length Organism Details
3-ISOPROPYLMALATE DEHYDROGENASE A 359 Thermus thermophilus EC#: 1.1.1.85 IUBMB
Details: ADDITIONAL AMINO ACIDS- N-TERMINAL MAS. C- TERMINAL AAALEHHHHHH
Gene Name(s): leuB TTHA1230
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
2PE
Query on 2PE

A NONAETHYLENE GLYCOL
C18 H38 O10
YZUUTMGDONTGTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
TRS
Query on TRS

A 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
TRIS BUFFER (Synonym)
C4 H12 N O3
LENZDBCJOHFCAS-UHFFFAOYSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.83 Å
  • R-Value Free: 0.197
  • R-Value Work: 0.164
  • Space Group: P 32 2 1

Unit Cell:

Length (Å) Angle (°)
a = 76.48 α = 90.00
b = 76.48 β = 90.00
c = 154.30 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-01-04
  • Released Date: 2011-01-19
  • Deposition author(s): Graczer, E., Merlin, A., Singh, R.K., Manikandan, K., Zavodsky, P., Weiss, M.S., Vas, M.

Revision History

  • 2012-04-18
    Type: Citation | Details: JRNL