2V2G

Crystal Structure of the C45S mutant of the Peroxiredoxin 6 of Arenicola Marina. Monoclinic form


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.197
  • R-Value Work: 0.160

Literature

Macromolecules
Sequence Display for 2V2G

Classification: OXIDOREDUCTASE

Total Structure Weight: 104079.54

Macromolecule Entities
Molecule Chains Length Organism Details
PEROXIREDOXIN 6 A, B, C, D 233 Arenicola marina EC#: 1.11.1.15 IUBMB
Mutation: C45S
Gene Name(s): Prdx6
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BEZ
Query on BEZ

A, B, C, D BENZOIC ACID
C7 H6 O2
WPYMKLBDIGXBTP-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B, C GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.197
  • R-Value Work: 0.160
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 127.25 α = 90.00
b = 83.23 β = 100.71
c = 98.35 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-06-05
  • Released Date: 2008-04-08
  • Deposition author(s): Smeets, A., Declercq, J.P.

Revision History

  • Version 1_0: 2008-04-08

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Advisory, Refinement description, Version format compliance