2BVE

STRUCTURE OF THE N-TERMINAL OF SIALOADHESIN IN COMPLEX WITH 2-PHENYL-PROP5AC

Structural Biology Knowledgebase: 2BVE SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.270
  • R-Value Work: 0.201

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2BVE

Classification: IMMUNE SYSTEM

Total Structure Weight: 27465.25

Macromolecule Entities
Molecule Chains Length Organism Details
SIALOADHESIN A, B 119 Mus musculus Fragment: DOMAIN ONE, IG-LIKE V-TYPE DOMAIN, RESIDUES 20-138
Gene Name(s): Siglec1 Sa Sn

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PH5
Query on PH5

A, B 2-PHENYL-PROP5AC
C19 H27 N O9
XDURJXFZCXMSHL-YZKZVDITSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
PH5 N/A in BindingDB
IC50: 215000 nM  BindingMOAD
IC50: 215000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.270
  • R-Value Work: 0.201
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 31.97 α = 90.00
b = 70.96 β = 90.00
c = 102.65 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-06-27
  • Released Date: 2006-07-19
  • Deposition author(s): Zaccai, N.R., May, A.P., Robinson, R.C., Burtnick, L.D., Crocker, P., Brossmer, R., Kelm, S., Jones, E.Y.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4