1N8C

Solution Structure of a Cis-Opened (10R)-N6-Deoxyadenosine Adduct of (9S,10R)-(9,10)-Epoxy-7,8,9,10-tetrahydrobenzo[a]pyrene in a DNA Duplex

Structural Biology Knowledgebase: 1N8C SBKB.org


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 11
  • Conformers Submitted: 11
  • Selection Criteria: 10 Structures and Their Minimized Average Were Deposited

Literature

Macromolecules
Sequence Display for 1N8C

Classification: DNA

Total Structure Weight: 6981.78

Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*CP*GP*GP*TP*CP*AP*CP*GP*AP*GP*G)-3' A 11 synthetic
5'-D(*CP*CP*TP*CP*GP*TP*GP*AP*CP*CP*G)-3' B 11 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
TBC
Query on TBC

A (9S,10R)-9-HYDROXY-7,8,9,10-TETRAHYDROBENZO[A]PYRENE
C20 H16 O
WJDNKJGWMKTBJQ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 11
  • Conformers Submitted: 11
  • Selection Criteria: 10 structures and their minimized average were deposited

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2002-11-20
  • Released Date: 2003-02-14
  • Deposition author(s): Volk, D.E., Thiviyanathan, V., Rice, J.S., Luxon, B.A., Shah, J.H., Yagi, H., Sayer, J.M., Yeh, H.J.C., Jerina, D.M., Gorenstein, D.G.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4