1N8C

Solution Structure of a Cis-Opened (10R)-N6-Deoxyadenosine Adduct of (9S,10R)-(9,10)-Epoxy-7,8,9,10-tetrahydrobenzo[a]pyrene in a DNA Duplex


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D NOESY1 mM Duplex: 20 mM sodium phosphate (pH 6.7); 56 mM NaCl; 50 uM sodium azide99.96% D2O100 mM6.7ambient288
22D NOESY1 mM Duplex: 20 mM sodium phosphate (pH 6.7); 56 mM NaCl; 50 uM sodium azide90% H2O/10% D2O100 mM6.7ambient278
32D TOCSY1 mM Duplex: 20 mM sodium phosphate (pH 6.7); 56 mM NaCl; 50 uM sodium azide99.96% D2O100 mM6.7ambient288
42D ROESY1 mM Duplex: 20 mM sodium phosphate (pH 6.7); 56 mM NaCl; 50 uM sodium azide99.96% D2O100 mM6.7ambient288
5Exchange-Only1 mM Duplex: 20 mM sodium phosphate (pH 6.7); 56 mM NaCl; 50 uM sodium azide99.96% D2O100 mM6.7ambient288
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianUNITYPLUS750
2VarianUNITYPLUS600
NMR Ensemble Information
Conformer Selection Criteria10 structures and their minimized average were deposited
Conformers Calculated Total Number11
Conformers Submitted Total Number11
Representative Model1 (minimized average structure)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionVNMR6.1
2data analysisVNMR6.1
3iterative matrix relaxationMORASS2.51D.G.Gorenstein, et al. UTMB
4refinementAmber5.0, 6.0, and 7.0PEARLMAN,CASE,CALDWELL,ROSS,CHEATHAM,FERGUSON,SEIBEL,SINGH,WEINER,KOLLMAN