1N8C
Solution Structure of a Cis-Opened (10R)-N6-Deoxyadenosine Adduct of (9S,10R)-(9,10)-Epoxy-7,8,9,10-tetrahydrobenzo[a]pyrene in a DNA Duplex
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 1 mM Duplex: 20 mM sodium phosphate (pH 6.7); 56 mM NaCl; 50 uM sodium azide | 99.96% D2O | 100 mM | 6.7 | ambient | 288 | |
2 | 2D NOESY | 1 mM Duplex: 20 mM sodium phosphate (pH 6.7); 56 mM NaCl; 50 uM sodium azide | 90% H2O/10% D2O | 100 mM | 6.7 | ambient | 278 | |
3 | 2D TOCSY | 1 mM Duplex: 20 mM sodium phosphate (pH 6.7); 56 mM NaCl; 50 uM sodium azide | 99.96% D2O | 100 mM | 6.7 | ambient | 288 | |
4 | 2D ROESY | 1 mM Duplex: 20 mM sodium phosphate (pH 6.7); 56 mM NaCl; 50 uM sodium azide | 99.96% D2O | 100 mM | 6.7 | ambient | 288 | |
5 | Exchange-Only | 1 mM Duplex: 20 mM sodium phosphate (pH 6.7); 56 mM NaCl; 50 uM sodium azide | 99.96% D2O | 100 mM | 6.7 | ambient | 288 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | UNITYPLUS | 750 |
2 | Varian | UNITYPLUS | 600 |
NMR Ensemble Information | |
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Conformer Selection Criteria | 10 structures and their minimized average were deposited |
Conformers Calculated Total Number | 11 |
Conformers Submitted Total Number | 11 |
Representative Model | 1 (minimized average structure) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | VNMR | 6.1 | |
2 | data analysis | VNMR | 6.1 | |
3 | iterative matrix relaxation | MORASS | 2.51 | D.G.Gorenstein, et al. UTMB |
4 | refinement | Amber | 5.0, 6.0, and 7.0 | PEARLMAN,CASE,CALDWELL,ROSS,CHEATHAM,FERGUSON,SEIBEL,SINGH,WEINER,KOLLMAN |