1KC6

HincII Bound to Cognate DNA

Structural Biology Knowledgebase: 1KC6 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.285
  • R-Value Work: 0.219

Literature

Macromolecules
Sequence Display for 1KC6

Classification: HYDROLASE / DNA

Total Structure Weight: 133984.92


Macromolecule Entities
Molecule Chains Length Organism Details
TYPE II RESTRICTION ENZYME HINCII A, B, C, D 257 Haemophilus influenzae EC#: 3.1.21.4 IUBMB
Mutation: R130T, S173W
Gene Name(s): hincIIR
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(P*CP*CP*GP*GP*TP*CP*GP*AP*CP*CP*GP*G)-3' E, F, G, H 12 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NA
Query on NA

A, E SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.285
  • R-Value Work: 0.219
  • Space Group: I 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 67.12 α = 90.00
b = 177.67 β = 90.00
c = 256.36 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-11-07
  • Released Date: 2001-12-07
  • Deposition author(s): Horton, N.C., Dorner, L.F., Perona, J.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4