1BDA

CATALYTIC DOMAIN OF HUMAN SINGLE CHAIN TISSUE PLASMINOGEN ACTIVATOR IN COMPLEX WITH DANSYL-EGR-CMK (DANSYL-GLU-GLY-ARG CHLOROMETHYL KETONE)

Structural Biology Knowledgebase: 1BDA SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.35 Å
  • R-Value Work:

Literature

Macromolecules
Sequence Display for 1BDA

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 60705.95

Macromolecule Entities
Molecule Chains Length Organism Details
SINGLE CHAIN TISSUE TYPE PLASMINOGEN ACTIVATOR A, B 265 Homo sapiens EC#: 3.4.21.68 IUBMB
Fragment: UNP residues 298-562
Gene Name(s): PLAT Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
2Z0
Query on 2Z0

A, B N-{[5-(dimethylamino)naphthalen-2-yl]sulfonyl}- L-alpha-glutamyl-N-[(1S)-4-{[amino(iminio)methyl]amino}- 1-(chloroacetyl)butyl]glycinamide
dansyl-Glu-Gly-Arg-chloromethyl-ketone (Synonym)
C26 H37 Cl N7 O7 S
VKQAIOBCWDJDIP-PMACEKPBSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Biologically Interesting Molecules 1 Unique
ID Chains Name Type/Class 2D Diagram 3D Interactions
PRD_000413
Query on PRD_000413
A, B dansylglutamyl-glycyl-arginine chloromethyl ketone Peptide-like /
Inhibitor
Ligand Explorer

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.35 Å
  • R-Value Observed:
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 43.99 α = 90.00
b = 80.78 β = 90.00
c = 159.16 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-05-07
  • Released Date: 1999-05-11
  • Deposition author(s): Bode, W., Renatus, M., Engh, R.A.

Revision History

  • 2012-12-12
    Type: Other | Details: Add PRD info
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Atom nomenclature | Details: Atom nomenclature
  • 2011-07-13
    Type: Binding sites and description | Details: Binding sites and description
  • 2011-07-13
    Type: Non-polymer description | Details: Non-polymer description
  • 2011-07-13
    Type: Function and keywords | Details: Function and keywords
  • 2011-07-13
    Type: Linkage | Details: Linkage
  • 2011-07-13
    Type: Sequence database correspondence | Details: Sequence database correspondence
  • 2011-07-13
    Type: Polymer description | Details: Changed inhibitor presentation or chemistry