1BDA

CATALYTIC DOMAIN OF HUMAN SINGLE CHAIN TISSUE PLASMINOGEN ACTIVATOR IN COMPLEX WITH DANSYL-EGR-CMK (DANSYL-GLU-GLY-ARG CHLOROMETHYL KETONE)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
18.2pH 8.2
Crystal Properties
Matthews coefficientSolvent content
2.3648

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 43.99α = 90
b = 80.78β = 90
c = 159.16γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray290IMAGE PLATEMARRESEARCH1996-06-13M
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RUH2R

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.12586.70.1473.62.994142
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
13.13.1855.20.631.21.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTNO FREE R-FACTOR1RTF3.357268458126.1
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
x_dihedral_angle_d25.74
x_scangle_it4.228
x_mcangle_it3.581
x_scbond_it2.661
x_mcbond_it2.09
x_angle_deg1.671
x_improper_angle_d1.386
x_bond_d0.01
x_angle_deg_prot
x_bond_d_na
RMS Deviations
KeyRefinement Restraint Deviation
x_dihedral_angle_d25.74
x_scangle_it4.228
x_mcangle_it3.581
x_scbond_it2.661
x_mcbond_it2.09
x_angle_deg1.671
x_improper_angle_d1.386
x_bond_d0.01
x_angle_deg_prot
x_bond_d_na
x_angle_d
x_dihedral_angle_d_prot
x_angle_d_na
x_improper_angle_d_na
x_improper_angle_d_prot
x_angle_d_prot
x_bond_d_prot
x_angle_deg_na
x_dihedral_angle_d_na
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4170
Nucleic Acid Atoms
Solvent Atoms19
Heterogen Atoms82

Software

Software
Software NamePurpose
MOSFLMdata reduction
ROTAGRdata reduction
X-PLORmodel building
X-PLORrefinement
ROTAGRdata scaling
X-PLORphasing