2GWS

Crystal Structure of human DNA Polymerase lambda with a G/G mismatch in the primer terminus


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.253
  • R-Value Work: 0.209

Literature

Macromolecules
Sequence Display for 2GWS

Classification: Transferase / DNA

Total Structure Weight: 176302.77


Macromolecule Entities
Molecule Chains Length Organism Details
DNA polymerase lambda A, E, I, M 335 Homo sapiens EC#: 2.7.7.7 IUBMB 4.2.99 IUBMB
Gene Name(s): POLL Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*CP*GP*GP*CP*AP*GP*CP*GP*CP*AP*C)-3' F, J, N, T 11 synthetic
5'-D(*GP*TP*GP*CP*GP*G)-3' G, K, P, R 6 synthetic
5'-D(P*GP*CP*CP*G)-3' D, H, L, Q 4 synthetic

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CAC
Query on CAC

D, H, J CACODYLATE ION
dimethylarsinate (Synonym)
C2 H6 As O2
OGGXGZAMXPVRFZ-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

E, N 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

F MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A, E, I, M, P, Q, T SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.253
  • R-Value Work: 0.209
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 192.37 α = 90.00
b = 98.27 β = 90.00
c = 104.96 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-05-05
  • Released Date: 2006-09-05
  • Deposition author(s): Garcia-Diaz, M., Picher, A.J., Bebenek, K., Pedersen, L.C., Kunkel, T.A., Blanco, L.

Revision History

  • Version 1_0: 2006-09-05

    Type: Initial release

  • Version 1_1: 2008-05-01

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Non-polymer description, Version format compliance

  • Version 1_3: 2017-10-18

    Type: Refinement description