5T29

Crystal structure of 10E8 Fab light chain mutant3, against the MPER region of the HIV-1 Env, in complex with the MPER epitope scaffold T117v2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.03 Å
  • R-Value Free: 0.213
  • R-Value Work: 0.174

Literature

Macromolecules
Sequence Display for 5T29

Classification: IMMUNE SYSTEM

Total Structure Weight: 67225.69

Macromolecule Entities
Molecule Chains Length Organism Details
Antibody 10E8 FAB HEAVY CHAIN H 236 Homo sapiens
Antibody 10E8 FAB LIGHT CHAIN L 215 Homo sapiens
10E8 EPITOPE SCAFFOLD T117V2 O 163 Synthetic construct

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PEG
Query on PEG

L DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

L PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.03 Å
  • R-Value Free: 0.213
  • R-Value Work: 0.174
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 110.88 α = 90.00
b = 66.97 β = 101.46
c = 84.26 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-08-23
  • Released Date: 2017-03-08
  • Deposition author(s): Irimia, A., Wilson, I.A.

Revision History

  • Version 1_0: 2017-03-08

    Type: Initial release

  • Version 1_1: 2017-09-20

    Type: Author supporting evidence