5SY8

Crystal structure of the complex of 10E8 Fab light chain mutant1 and T117v2 HIV-1 MPER scaffold


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.62 Å
  • R-Value Free: 0.214
  • R-Value Work: 0.172

Literature

Macromolecules
Sequence Display for 5SY8

Classification: IMMUNE SYSTEM

Total Structure Weight: 67205.00

Macromolecule Entities
Molecule Chains Length Organism Details
10E8 FAB HEAVY CHAIN H 235 Homo sapiens
10E8 FAB LIGHT CHAIN L 215 Homo sapiens
10E8 EPITOPE SCAFFOLD T117v2 O 163 Synthetic construct

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

L, O GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.62 Å
  • R-Value Free: 0.214
  • R-Value Work: 0.172
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 41.40 α = 101.75
b = 56.60 β = 101.19
c = 64.20 γ = 92.17

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-08-10
  • Released Date: 2017-03-08
  • Deposition author(s): Irimia, A., Wilson, I.A.

Revision History

  • Version 1_0: 2017-03-08

    Type: Initial release

  • Version 1_1: 2017-09-20

    Type: Author supporting evidence