Download MendeleyCrystal structure of a duf4847 family protein (BVU_2626) from Bacteroides vulgatus ATCC 8482 at 1.00 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
4ZGF
Crystal structure of a duf4847 family protein (BVU_2626) from Bacteroides vulgatus ATCC 8482 at 1.00 A resolution
- PDB DOI: https://doi.org/10.2210/pdb4ZGF/pdb
- Classification: UNKNOWN FUNCTION
- Organism(s): Phocaeicola vulgatus ATCC 8482
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2015-04-22 Released: 2015-05-06
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.00 Å
- R-Value Free: 0.137
- R-Value Work: 0.116
- R-Value Observed: 0.117
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Uncharacterized protein | 141 | Phocaeicola vulgatus ATCC 8482 | Mutation(s): 0 Gene Names: BVU_2626 |  | |
UniProt | |||||
Find proteins for A6L3L5 (Phocaeicola vulgatus (strain ATCC 8482 / DSM 1447 / JCM 5826 / CCUG 4940 / NBRC 14291 / NCTC 11154)) Explore A6L3L5 Go to UniProtKB: A6L3L5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A6L3L5 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| P6G Query on P6G | E [auth A], F [auth A], G [auth A], H [auth A] | HEXAETHYLENE GLYCOL C12 H26 O7 IIRDTKBZINWQAW-UHFFFAOYSA-N |  | ||
| BEZ Query on BEZ | K [auth A] | BENZOIC ACID C7 H6 O2 WPYMKLBDIGXBTP-UHFFFAOYSA-N |  | ||
| ACT Query on ACT | I [auth A], J [auth A] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | ||
| CA Query on CA | B [auth A], C [auth A], D [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.00 Å
- R-Value Free: 0.137
- R-Value Work: 0.116
- R-Value Observed: 0.117
- Space Group: P 21 21 21
- Diffraction Data: https://doi.org/10.18430/M3DK5D
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 31.747 | α = 90 |
| b = 55.486 | β = 90 |
| c = 76.176 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PDB_EXTRACT | data extraction |
| SHELX | phasing |
| SHARP | phasing |
| XSCALE | data scaling |
| REFMAC | refinement |
| SHELXD | phasing |
| XDS | data reduction |
Entry History
Deposition Data
- Released Date: 2015-05-06 Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History (Full details and data files)
- Version 1.0: 2015-05-06
Type: Initial release - Version 1.1: 2017-11-22
Changes: Advisory, Derived calculations, Refinement description, Source and taxonomy - Version 1.2: 2023-02-01
Changes: Database references, Derived calculations
