4DZ2

Crystal structure of a Peptidyl-prolyl cis-trans isomerase with surface mutation R92G from Burkholderia pseudomallei complexed with FK506

Structural Biology Knowledgebase: 4DZ2 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.219

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4DZ2

Classification: ISOMERASE

Total Structure Weight: 25282.73

Macromolecule Entities
Molecule Chains Length Organism Details
Peptidyl-prolyl cis-trans isomerase A, B 113 Burkholderia pseudomallei EC#: 5.2.1.8 IUBMB
Mutation: R92G
Gene Name(s): BURPS1710b_A0907
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FK5
Query on FK5

A, B 8-DEETHYL-8-[BUT-3-ENYL]-ASCOMYCIN
K506 (Synonym)
C44 H69 N O12
QJJXYPPXXYFBGM-LFZNUXCKSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 106.44 α = 90.00
b = 49.05 β = 123.05
c = 66.64 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-02-29
  • Released Date: 2012-03-28
  • Deposition author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Revision History

  • 2014-03-19
    Type: Other | Details: --
  • 2014-03-12
    Type: Citation | Details: Citation update