4EYH

Human DNA polymerase iota incorporating dCTP opposite N-(deoxyguanosin-8-yl)-1-aminopyrene lesion

Structural Biology Knowledgebase: 4EYH SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.281
  • R-Value Work: 0.239

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4EYH

Classification: TRANSFERASE / DNA

Total Structure Weight: 52349.19


Macromolecule Entities
Molecule Chains Length Organism Details
DNA polymerase iota B 420 Homo sapiens EC#: 2.7.7.7 IUBMB
Fragment: UNP residues 26-445
Gene Name(s): POLI Gene View RAD30B
Macromolecule Entities
Molecule Chains Length Organism Details
DNA template T 8 synthetic
DNA primer P 7 synthetic

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DCP
Query on DCP

B 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE
C9 H16 N3 O13 P3
RGWHQCVHVJXOKC-SHYZEUOFSA-N
Ligand Explorer
 
JSmol
MG
Query on MG

B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
DG8
Query on DG8
T DNA LINKING C26 H23 N6 O7 P DG

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.281
  • R-Value Work: 0.239
  • Space Group: P 65 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 98.05 α = 90.00
b = 98.05 β = 90.00
c = 194.65 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-05-01
  • Released Date: 2013-01-09
  • Deposition author(s): Kirouac, K., Ling, H.

Revision History

  • 2013-02-20
    Type: Citation | Details: Citation update