Crystal structure of an intramolecular human telomeric DNA G-quadruplex 21-mer bound by the naphthalene diimide compound BMSG-SH-3 DOI:10.2210/pdb4daq/pdb   NDB ID: NA1556

4DAQ   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A+S)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: DNA Structure Weight: 7644.80 Molecule: DNA (5'-D(*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*G)-3') Polymer: 1 Type: dna Length: 21 Chains: A Organism synthetic construct     Source Hide Polymer: 1 Scientific Name: Synthetic construct (synthetic construct)   Taxonomy         Related PDB Entries Hide Identifier Details 3SC8  Same naphthalene diimide compound bound to a 22-mer human telomeric G-quadruplex.  3T5E  Similar naphthalene diimide compound bound to a 22-mer human telomeric G-quadruplex.  3UYH  Similar naphthalene diimide compound bound to a 22-mer human telomeric G-quadruplex.  4DA3  Similar naphthalene diimide compound bound to the same 21-mer human telomeric G-quadruplex.      Ligand Chemical Component Hide Identifier Formula Name Interactions K Search  Download  K POTASSIUM ION   Ligand Explorer R8G Search  Download  C46 H72 N12 O4 2,7-bis[3-(4-methylpiperazin-1-yl)propyl]- 4,9-bis{[3-(4-methylpiperazin-1-yl)propyl]amino}benzo[lmn][3,8]phenanthroline- 1,3,6,8(2H,7H)-tetrone   Ligand Explorer     Structural Biology Knowledgebase Data Hide   Nucleic Acid Database Hide View the NDB ID associated with this structure: NA1556     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PISA (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Collie, G.W.,  Neidle, S. Deposition:   2012-01-13 Release:   2013-01-16 Last Modified (REVDAT):   2013-04-24     Revision History    Hide Mouse over text for details 2013-04-24 Citation 2013-04-03 Citation     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   2.75 R-Value: 0.216 (obs.) R-Free: 0.275 Space Group: P 31 2 1 Unit Cell:   Length [Å] Angles [°] a = 50.51 α = 90.00  b = 50.51 β = 90.00  c = 51.72 γ = 120.00