3MDZ

Crystal Structure of Human Carbonic Anhydrase VII [isoform 1], CA7

Structural Biology Knowledgebase: 3MDZ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.32 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.200

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3MDZ

Classification: Lyase

Total Structure Weight: 32332.81

Macromolecule Entities
Molecule Chains Length Organism Details
Carbonic anhydrase 7 A 281 Homo sapiens EC#: 4.2.1.1 IUBMB
Fragment: residues in UNP 24-281
Gene Name(s): CA7 Gene View

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EZL
Query on EZL

A 6-ethoxy-1,3-benzothiazole-2-sulfonamide
Ethoxzolamide (Synonym)
C9 H10 N2 O3 S2
OUZWUKMCLIBBOG-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
EZL Kd: 0.71 nM (100) BindingDB
Ki: 0.78 - 0.8 nM (100) BindingDB

N/A in BindingMoad
Ki: 0.8 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.32 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.200
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 69.71 α = 90.00
b = 97.75 β = 90.00
c = 82.44 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-03-31
  • Released Date: 2010-06-23
  • Deposition author(s): Ugochukwu, E., Shafqat, N., Pilka, E., Chaikuad, A., Krojer, T., Muniz, J., Kim, J., Bray, J., Bountra, C., Arrowsmith, C.H., Weigelt, J., Edwards, A., von Delft, F., Carpenter, E.P., Yue, W.W., Oppermann, U., Structural Genomics Consortium (SGC)

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4