3MDZ

Crystal Structure of Human Carbonic Anhydrase VII [isoform 1], CA7


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP4.52930.2M Na/K tartrate, 1M Ammonium Sulphate, 0.1M Tri Nacit, pH 4.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.2144.42

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 69.71α = 90
b = 97.746β = 90
c = 82.443γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDRAYONIX MX-3002010-03-06MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I240.979DiamondI24

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.3219.7499.40.0780.07811.44.312474
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.322.451000.7070.70724.58143

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3CAJ2.3219.74118251182558899.150.202680.202680.200150.25204RANDOM44.544
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
3.61-1.69-1.92
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.647
r_dihedral_angle_3_deg15.55
r_dihedral_angle_4_deg14.466
r_dihedral_angle_1_deg7.016
r_scangle_it2.999
r_scbond_it1.891
r_angle_refined_deg1.57
r_mcangle_it1.192
r_angle_other_deg0.898
r_mcbond_it0.65
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.647
r_dihedral_angle_3_deg15.55
r_dihedral_angle_4_deg14.466
r_dihedral_angle_1_deg7.016
r_scangle_it2.999
r_scbond_it1.891
r_angle_refined_deg1.57
r_mcangle_it1.192
r_angle_other_deg0.898
r_mcbond_it0.65
r_mcbond_other0.127
r_chiral_restr0.087
r_bond_refined_d0.015
r_gen_planes_refined0.008
r_bond_other_d0.002
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1987
Nucleic Acid Atoms
Solvent Atoms48
Heterogen Atoms35

Software

Software
Software NamePurpose
MAR345data collection
PHASERphasing
REFMACrefinement
XDSdata reduction
SCALAdata scaling