Structural Insight into Methyl-Coenzyme M Reductase Chemistry using Coenzyme B Analogues DOI:10.2210/pdb3m2u/pdb

3M2U   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A+S)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Transferase Structure Weight: 277188.99 Molecule: Methyl-coenzyme M reductase I subunit alpha Polymer: 1 Type: protein Length: 549 Chains: A, D EC#: 2.8.4.1    Organism Methanothermobacter marburgensis str. Marburg Gene Names mcrA MTBMA_c15480 UniProtKB:   Protein Feature View | Search PDB | P11558     Molecule: Methyl-coenzyme M reductase I subunit beta Polymer: 2 Type: protein Length: 442 Chains: B, E EC#: 2.8.4.1    Organism Methanothermobacter marburgensis str. Marburg Gene Names mcrB MTBMA_c15520 UniProtKB:   Protein Feature View | Search PDB | P11560     Molecule: Methyl-coenzyme M reductase I subunit gamma Polymer: 3 Type: protein Length: 248 Chains: C, F EC#: 2.8.4.1    Organism Methanothermobacter marburgensis str. Marburg Gene Names mcrG MTBMA_c15490 UniProtKB:   Protein Feature View | Search PDB | P11562         Source Hide Polymer: 1 Scientific Name: Methanothermobacter marburgensis   Taxonomy     Polymer: 2 Scientific Name: Methanothermobacter marburgensis   Taxonomy     Polymer: 3 Scientific Name: Methanothermobacter marburgensis   Taxonomy         Related PDB Entries Hide Identifier Details 3M1V    3M2R    3M2V    3M30    3M32        Ligand Chemical Component Hide Identifier Formula Name Interactions ACT Search  Download  C2 H3 O2 ACETATE ION   Ligand Explorer COM Search  Download  C2 H6 O3 S2 1-THIOETHANESULFONIC ACID   Ligand Explorer EDO Search  Download  C2 H6 O2 1,2-ETHANEDIOL   Ligand Explorer F43 Search  Download  C42 H49 N6 Ni O13 FACTOR 430   Ligand Explorer MG Search  Download  Mg MAGNESIUM ION   Ligand Explorer PEG Search  Download  C4 H10 O3 DI(HYDROXYETHYL)ETHER   Ligand Explorer TP7 Search  Download  C11 H24 N O7 P S PHOSPHORIC ACID N-(1-HYDROXY-7-MERCAPTO-HEPTYL)THREONINE ESTER   Ligand Explorer TXZ Search  Download  C10 H20 N O7 P S O-phosphono-N-(6-sulfanylhexanoyl)-L-threonine   Ligand Explorer ZN Search  Download  Zn ZINC ION   Ligand Explorer     External Ligand Annotations Hide Identifier   Binding Affinity (Sequence Identity %) TXZ Search  Download  N/A in BindingDB N/A in BindingMoad Ki: 100 nM - data from PDBbind       Modified Residues Hide Identifier Formula Parent Type MHS Search  C7 H11 N3 O2 HIS lPeptideLinking AGM Search  C7 H17 N4 O2 ARG lPeptideLinking MGN Search  C6 H12 N2 O3 GLN lPeptideLinking GL3 Search  C2 H5 N O S GLY lPeptideLinking SMC Search  C4 H9 N O2 S CYS lPeptideLinking     External Domain Annotations Hide Pfam Classification: 5 Domains - data from Pfam   GO Terms: 10 Terms - data from GO      Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PISA (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Cedervall, P.E.,  Dey, M.,  Ragsdale, S.W.,  Wilmot, C.M. Deposition:   2010-03-08 Release:   2010-09-15     Revision History    Hide Mouse over text for details 2011-07-13 Version format compliance     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   1.40 R-Value: 0.132 (obs.) R-Free: 0.155 Space Group: P 21 Unit Cell:   Length [Å] Angles [°] a = 82.02 α = 90.00  b = 118.26 β = 91.84  c = 122.39 γ = 90.00