2LH8

Syrian hamster prion protein with thiamine


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 1
  • Conformers Submitted: 1
  • Selection Criteria: Structures with the Least Restraint Violations

Literature

Macromolecules
Sequence Display for 2LH8

Classification: MEMBRANE PROTEIN

Total Structure Weight: 12723.22

Macromolecule Entities
Molecule Chains Length Organism Details
Major prion protein A 104 Mesocricetus auratus Fragment: UNP residues 125-228
Gene Name(s): PRNP Gene View PRP
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
VIB
Query on VIB

A 3-(4-AMINO-2-METHYL-PYRIMIDIN-5-YLMETHYL)- 5-(2-HYDROXY-ETHYL)-4-METHYL-THIAZOL-3-IUM
THIAMIN, VITAMIN B1 (Synonym)
C12 H17 N4 O S
JZRWCGZRTZMZEH-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
VIB N/A in BindingDB
N/A in BindingMoad
Kd: 65360 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 1
  • Conformers Submitted: 1
  • Selection Criteria: structures with the least restraint violations

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-08-05
  • Released Date: 2011-09-14
  • Deposition author(s): Perez-Pineiro, R., Bjorndahl, T.C., Berjanskii, M., Hau, D., Li, L., Huang, A., Lee, R., Gibbs, E., Ladner, C., Wei Dong, Y., Abera, A., Cashman, N.R., Wishart, D.

Revision History

  • 2011-11-30
    Type: Citation | Details: Citation update