2Q6U

SeMet-substituted form of NikD


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.228
  • R-Value Work: 0.191

Literature

Macromolecules
Sequence Display for 2Q6U

Classification: FLAVOPROTEIN

Total Structure Weight: 45159.29

Macromolecule Entities
Molecule Chains Length Organism Details
NikD protein A 395 Streptomyces tendae Mutation: M110M
Gene Name(s): nikD
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAD
Query on FAD

A FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BEZ
Query on BEZ

A BENZOIC ACID
C7 H6 O2
WPYMKLBDIGXBTP-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.228
  • R-Value Work: 0.191
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 78.52 α = 90.00
b = 96.12 β = 118.49
c = 78.05 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-06-05
  • Released Date: 2007-07-31
  • Deposition author(s): Carrell, C.J., Bruckner, R.C., Venci, D., Zhao, G., Jorns, M.S., Mathews, F.S.

Revision History

  • 2011-07-13
    Type: Version format compliance