2NL8

The origin binding domain of the SV40 large T antigen bound non specifically to a 17 bp palindrome DNA (sites 1 and 3)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.299
  • R-Value Work: 0.237

Literature

Macromolecules
Sequence Display for 2NL8

Classification: DNA binding protein / DNA

Total Structure Weight: 20842.18


Macromolecule Entities
Molecule Chains Length Organism Details
large T antigen A 133 Macaca mulatta polyomavirus 1 Fragment: Origin binding domain (residues 131-259)
Mutation: C216S
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
18-nt PEN element of the SV40 DNA origin W 18 synthetic P2 pentamer replaced with ATCAT


Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.299
  • R-Value Work: 0.237
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 43.87 α = 90.00
b = 43.87 β = 90.00
c = 238.31 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-10-19
  • Released Date: 2006-12-12
  • Deposition author(s): Martynowski, D., Bochkareva, E., Bochkarev, A.

Revision History

  • Version 1_0: 2006-12-12

    Type: Initial release

  • Version 1_1: 2008-05-01

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance