The origin binding domain of the SV40 large T antigen bound non specifically to a 17 bp palindrome DNA (sites 1 and 3)
DOI:10.2210/pdb2nl8/pdb   NDB ID: PD0883
2NL8
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: DNA Binding Protein/dna
    Structure Weight: 20842.39
    Molecule: 18-nt PEN element of the SV40 DNA origin
    Polymer: 1 Type: dna Length: 18
    Chains: W
    Details: P2 pentamer replaced with ATCAT
    Molecule: large T antigen
    Polymer: 2 Type: protein Length: 133
    Chains: A
    Fragment: Origin binding domain (residues 131-259)
    Mutation: CYS216SER
    Organism: Simian virus 40
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  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Simian virus 40   Taxonomy   Expression System: Escherichia coli bl21(de3)  
     
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    Identifier Details
    2IPR    
    2ITJ    
    2ITL    
     
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  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:PD0883
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Martynowski, D.,  Bochkareva, E.,  Bochkarev, A.

    Deposition:   2006-10-19
    Release:   2006-12-12
    Last Modified (REVDAT):   2009-02-24
     
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    2011-07-13
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  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.30
    R-Value: 0.240 (obs.)
    R-Free: 0.299
    Space Group: P 43 21 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 43.87 α = 90.00 
    b = 43.87 β = 90.00 
    c = 238.31 γ = 90.00