2JB7

PAE2307 with AMP

PDB DOI: https://doi.org/10.2210/pdb2JB7/pdb

Classification: UNKNOWN FUNCTION
Organism(s): Pyrobaculum aerophilum
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2006-12-04 Released: 2008-08-05
Deposition Author(s): Rajasekaran, K., Lott, J.S., Johnston, J.M.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.65 Å
R-Value Free: 0.201
R-Value Work: 0.169
R-Value Observed: 0.172

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.3 of the entry. See complete history.

Literature

Pae2307 a Phosphotransferase

Rajasekaran, K., Lott, J.S., Johnston, J.M., Baker, E.N.

To be published.

Macromolecule Content

Total Structure Weight: 56.78 kDa
Atom Count: 4,279
Modelled Residue Count: 488
Deposited Residue Count: 492
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
HYPOTHETICAL PROTEIN PAE2307	A, B, C	164	Pyrobaculum aerophilum	Mutation(s): 0
UniProt
Find proteins for Q8ZVF7 (Pyrobaculum aerophilum (strain ATCC 51768 / DSM 7523 / JCM 9630 / CIP 104966 / NBRC 100827 / IM2)) Explore Q8ZVF7 Go to UniProtKB: Q8ZVF7
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q8ZVF7
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
AMP Query on AMP Download Ideal Coordinates CCD File SDF format, chain D [auth A] SDF format, chain F [auth B] SDF format, chain I [auth C] MOL2 format, chain D [auth A] MOL2 format, chain F [auth B] MOL2 format, chain I [auth C]	D [auth A], F [auth B], I [auth C]	ADENOSINE MONOPHOSPHATE C₁₀ H₁₄ N₅ O₇ P UDMBCSSLTHHNCD-KQYNXXCUSA-N		Interactions Focus chain D [auth A] Focus chain F [auth B] Focus chain I [auth C] Interactions & Density Focus chain D [auth A] Focus chain F [auth B] Focus chain I [auth C]
EPE Query on EPE Download Ideal Coordinates CCD File SDF format, chain E [auth A] SDF format, chain J [auth C] SDF format, chain H [auth B] MOL2 format, chain E [auth A] MOL2 format, chain J [auth C] MOL2 format, chain H [auth B]	E [auth A], H [auth B], J [auth C]	4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID C₈ H₁₈ N₂ O₄ S JKMHFZQWWAIEOD-UHFFFAOYSA-N		Interactions Focus chain E [auth A] Focus chain H [auth B] Focus chain J [auth C] Interactions & Density Focus chain E [auth A] Focus chain H [auth B] Focus chain J [auth C]
ACT Query on ACT Download Ideal Coordinates CCD File SDF format, chain G [auth B] MOL2 format, chain G [auth B]	G [auth B]	ACETATE ION C₂ H₃ O₂ QTBSBXVTEAMEQO-UHFFFAOYSA-M		Interactions Focus chain G [auth B] Interactions & Density Focus chain G [auth B]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.65 Å
R-Value Free: 0.201
R-Value Work: 0.169
R-Value Observed: 0.172
Space Group: I 4₁ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 120.133	α = 90
b = 120.133	β = 90
c = 156.251	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
MOSFLM	data reduction
SCALA	data scaling
REFMAC	phasing

Structure Validation

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Ligand Structure Quality Assessment

Entry History

Deposition Data

Released Date: 2008-08-05

Deposition Author(s):

Rajasekaran, K.

Lott, J.S.

Johnston, J.M.

Revision History (Full details and data files)

Version 1.0: 2008-08-05
Type: Initial release
Version 1.1: 2011-05-08
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2023-12-13
Changes: Data collection, Database references, Other, Refinement description

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Help and Resources

2JB7

PAE2307 with AMP

Pae2307 a Phosphotransferase

Entity ID: 1

UniProt

Entity Groups

Sequence Annotations

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Experimental Data

Structure Validation

Ligand Structure Quality Assessment

Deposition Data

Revision History (Full details and data files)