2JB7

PAE2307 with AMP

X-RAY DIFFRACTION

---

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1		8.7		PAE2307(6MG/ML) WITH 0.5MM AMP IN 21% PEG4000, 200MM SODIUM ACETATE TRIHYDRATE AND 100 MM TRIS HCL; PH 8.7

Crystal Properties
Matthews coefficient	Solvent content
2.35	47.2

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 120.133	α = 90
b = 120.133	β = 90
c = 156.251	γ = 90

Symmetry
Space Group	I 41 2 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	MARRESEARCH	FLAT COLLIMATING MIRROR, TOROID FOCUSING MIRROR	2006-02-24	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SSRL BEAMLINE BL9-2		SSRL	BL9-2

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.65	37.4	100	0.07	27.9	12.2		68521

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.65	1.74	100		0.46	2.5	5.9

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	PDB ENTRY 1WVQ	1.65	95.35	61634	6864	99.9	0.172	0.169	0.201	RANDOM	20.81

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.43			0.43		-0.85

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	33.988
r_dihedral_angle_4_deg	19.186
r_dihedral_angle_3_deg	12.309
r_dihedral_angle_1_deg	6.32
r_scangle_it	3.563
r_scbond_it	2.591
r_angle_refined_deg	1.739
r_mcangle_it	1.385
r_mcbond_it	1.128
r_angle_other_deg	1.061
r_symmetry_hbond_refined	0.343
r_symmetry_vdw_other	0.222
r_nbd_refined	0.215
r_nbd_other	0.215
r_nbtor_refined	0.181
r_xyhbond_nbd_refined	0.139
r_chiral_restr	0.095
r_nbtor_other	0.087
r_symmetry_vdw_refined	0.081
r_bond_refined_d	0.016
r_bond_other_d	0.009
r_gen_planes_refined	0.006
r_gen_planes_other	0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	3826
Nucleic Acid Atoms
Solvent Atoms	312
Heterogen Atoms	118

Software

Software
Software Name	Purpose
REFMAC	refinement
MOSFLM	data reduction
SCALA	data scaling
REFMAC	phasing