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Crystal Structure of human DNA polymerase lambda in complex with a one nucleotide DNA gap
DOI:10.2210/pdb1xsl/pdb   NDB ID: PD0604
1XSL
Primary Citation
 
 
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  •   Molecular Description Hide
    Classification: Transferase/dna
    Structure Weight: 175713.37
    Molecule: 5'-D(*CP*GP*GP*CP*AP*GP*CP*GP*CP*AP*C)-3'
    Polymer: 1 Type: dna Length: 11
    Chains: B, F, J, N
    Molecule: 5'-D(*GP*TP*GP*CP*GP*C)-3'
    Polymer: 2 Type: dna Length: 6
    Chains: C, G, K, O
    Molecule: 5'-D(P*GP*CP*CP*G)-3'
    Polymer: 3 Type: dna Length: 4
    Chains: D, H, L, P
    Molecule: DNA polymerase lambda
    Polymer: 4 Type: protein Length: 335
    Chains: A, E, I, M
    EC#: 2.7.7.7    4.2.99   
    Fragment: 39 kDa catalytic C-terminal domain
    Organism Homo sapiens
    Gene Name POLL
    UniProtKB:   Protein Feature View | Search PDB | Q9UGP5  
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 4
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
     
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    Identifier Details
    1XSN   
    1XSP   
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name Interactions
    CAC
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    Download      		CAC C2 H6 As O2
    CACODYLATE ION
    MG
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    Download      		MG Mg
    MAGNESIUM ION
    NA
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    Download      		NA Na
    SODIUM ION
     
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  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: PD0604
     
 
Data in orange boxes are gathered from external resources (when available).
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  Biological Assembly 1       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Garcia-Diaz, M.,  Bebenek, K.,  Krahn, J.M.,  Kunkel, T.A.,  Pedersen, L.C.

    Deposition:   2004-10-19
    Release:   2005-01-18
    Last Modified (REVDAT):   2011-07-13
     
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    2011-07-13
    Version format compliance
    2011-07-13
    Non-polymer description
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.30
    R-Value: 0.207 (obs.)
    R-Free: 0.252
    Space Group: P 21 21 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 191.50 α = 90.00 
    b = 98.81 β = 90.00 
    c = 104.52 γ = 90.00