Crystal structure of V108I mutant HIV-1 reverse transcriptase in complex with nevirapine DOI:10.2210/pdb1s1x/pdb

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Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Transferase Structure Weight: 116289.70 Molecule: Reverse transcriptase Polymer: 1 Type: protein Length: 560 Chains: A EC#: 2.7.7.49    2.7.7.7    3.1.26.13    Fragment: P66 Mutation: V108I Organism Human immunodeficiency virus 1 Gene Name gag-pol UniProtKB:   Protein Feature View | Search PDB | P04585     Molecule: Reverse transcriptase Polymer: 2 Type: protein Length: 440 Chains: B EC#: 2.7.7.49    2.7.7.7    3.1.26.13    Fragment: P51 Mutation: V108I Organism Human immunodeficiency virus 1 Gene Name gag-pol UniProtKB:   Protein Feature View | Search PDB | P04585       Source Hide Polymer: 1 Scientific Name: Human immunodeficiency virus 1   Taxonomy   Expression System: Escherichia coli   Polymer: 2 Scientific Name: Human immunodeficiency virus 1   Taxonomy   Expression System: Escherichia coli       Related PDB Entries Hide Identifier Details 1C0T  HIV-1 RT COMPLEXED WITH BM+21.1326  1C0U  HIV-1 RT COMPLEXED WITH BM+50.0934  1C1B  HIV-1 RT COMPLEXED WITH GCA-186  1C1C  HIV-1 RT COMPLEXED WITH TNK-6123  1DTQ  HIV-1 RT COMPLEXED WITH PETT-1  1DTT  HIV-1 RT COMPLEXED WITH PETT-2  1EP4  HIV-1 RT COMPLEXED WITH S-1153  1FK9  HIV-1 RT COMPLEXED WITH DMP-226 (EFAVIRENZ)  1FKO  K103N MUTANT HIV-1 RT COMPLEXED WITH DMP-226 (EFAVIRENZ)  1FKP  K103N MUTANT HIV-1 RT COMPLEXED WITH NEVIRAPINE  1JKH  Y181C MUTANT HIV-1 RT COMPLEXED WITH DMP-226 (EFAVIRENZ)  1JLA  Y181C MUTANT HIV-1 RT COMPLEXED TNK-651  1JLB  Y181C MUTANT HIV-1 RT COMPLEXED WITH NEVIRAPINE  1JLC  Y181C MUTANT HIV-1 RT COMPLEXED WITH PETT-2  1JLE  Y188C MUTANT HIV-1 RT  1JLF  Y188C MUTANT HIV-1 RT COMPLEXED WITH NEVIRAPINE  1JLG  Y188C MUTANT HIV-1 RT COMPLEXED WITH UC-781  1JLQ  HIV-1 RT COMPLEXED WITH 739W94  1KLM  HIV-1 RT COMPLEXED WITH BHAP (U-90152)  1LW0  T215Y MUTANT HIV-1 RT COMPLEXED WITH NEVIRAPINE  1LW2  T215Y MUTANT HIV-1 RT COMPLEXED WITH 1051U91  1LWC  M184V MUTANT HIV-1 RT COMPLEXED WITH NEVIRAPINE  1LWE  RTMN (M41L+T215Y MUTANT HIV-1 RT) COMPLEXED WITH NEVIRAPINE  1LWF  RTMQ/M184V (M41L+D67N+K70R+M184V+T215Y MUTANT HIV-1 RT) COMPLEXED WITH NEVIRAPINE  1REV  HIV-1 RT COMPLEXED WITH 9-CL-TIBO  1RT1  HIV-1 RT COMPLEXED WITH MKC-442  1RT2  HIV-1 RT COMPLEXED WITH TNK-651  1RT3  AZT DRUG RESISTANT HIV-1 RT MUTANT (RTMC) COMPLEXED WITH 1051U91  1RT4  HIV-1 RT COMPLEXED WITH UC-781  1RT5  HIV-1 RT COMPLEXED WITH UC-10  1RT6  HIV-1 RT COMPLEXED WITH UC-38  1RT7  HIV-1 RT COMPLEXED WITH UC-84  1RTH  HIV-1 RT COMPLEXED WITH 1051U91  1RTI  HIV-1 RT COMPLEXED WITH HEPT  1RTJ  HIV-1 RT  1S1T  L100I MUTANT HIV-1 RT COMPLEXED WITH UC-781  1S1U  L100I MUTANT HIV-1 RT COMPLEXED WITH NEVIRAPINE  1S1V  L100I MUTANT HIV-1 RT COMPLEXED WITH TNK-651  1S1W  V106A MUTANT HIV-1 RT COMPLEXED WITH UC-781  1VRT  HIV-1 RT COMPLEXED WITH NEVIRAPINE  1VRU  HIV-1 RT COMPLEXED WITH ALPHA-APA      Ligand Chemical Component Hide Identifier Formula Name Interactions NVP Search  Download  C15 H14 N4 O 11-CYCLOPROPYL-5,11-DIHYDRO-4-METHYL-6H-DIPYRIDO[3,2- B:2',3'-E][1,4]DIAZEPIN-6-ONE   Ligand Explorer     External Ligand Annotations Hide Identifier   Binding Affinity (Sequence Identity %) NVP Search  Download  EC50: 20 - 380 nM (99) - data from BindingDB   IC50: 2.6 - 23000 nM (98 - 99) - data from BindingDB   Ki: 400 - 36000 nM (99) - data from BindingDB   N/A in BindingMoad N/A in PDBbind     Modified Residues Hide Identifier Formula Parent Type CSD Search  C3 H7 N O4 S CYS lPeptideLinking     External Domain Annotations Hide SCOP Classification v1.75: 3 Domains - data from SCOP   CATH Classification v3.4.0: 9 Domains - data from CATH   Pfam Classification: 7 Domains - data from Pfam       Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PISA (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Ren, J.,  Nichols, C.E.,  Chamberlain, P.P.,  Stammers, D.K. Deposition:   2004-01-07 Release:   2004-06-29 Last Modified (REVDAT):   2009-02-24     Revision History    Hide Mouse over text for details 2011-07-13 Version format compliance     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   2.80 R-Value: 0.229 (obs.) R-Free: 0.295 Space Group: P 21 21 21 Unit Cell:   Length [Å] Angles [°] a = 138.40 α = 90.00  b = 109.00 β = 90.00  c = 72.80 γ = 90.00      Molecule of the Month Hide Reverse Transcriptase