1IG0

Crystal Structure of yeast Thiamin Pyrophosphokinase

Structural Biology Knowledgebase: 1IG0 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.234
  • R-Value Work: 0.217

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1IG0

Classification: TRANSFERASE

Total Structure Weight: 73849.38

Macromolecule Entities
Molecule Chains Length Organism Details
Thiamin pyrophosphokinase A, B 319 Saccharomyces cerevisiae EC#: 2.7.6.2 IUBMB
Gene Name(s): THI80 YOR143C YOR3373C

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
VIB
Query on VIB

A, B 3-(4-AMINO-2-METHYL-PYRIMIDIN-5-YLMETHYL)- 5-(2-HYDROXY-ETHYL)-4-METHYL-THIAZOL-3-IUM
THIAMIN, VITAMIN B1 (Synonym)
C12 H17 N4 O S
JZRWCGZRTZMZEH-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.234
  • R-Value Work: 0.217
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 118.31 α = 90.00
b = 130.84 β = 90.00
c = 44.32 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-04-16
  • Released Date: 2001-06-20
  • Deposition author(s): Baker, L.-J., Dorocke, J.A., Harris, R.A., Timm, D.E.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4