Ligand validation:8DB5

GDP: GUANOSINE-5'-DIPHOSPHATE

GDP is a Ligand Of Interest in 8DB5 designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
8DB5_GDP_C_201	96%	42%	0.069	0.977	1.14	1.15	2	3	0	0	100%	1
8DB5_GDP_G_201	95%	47%	0.07	0.976	1.13	0.96	3	1	0	0	100%	1
8DB5_GDP_E_201	94%	38%	0.076	0.977	1.11	1.37	1	5	0	0	100%	1
8DB5_GDP_E_202	91%	39%	0.081	0.967	1.17	1.27	2	4	0	0	100%	1
8DB5_GDP_A_201	90%	41%	0.087	0.971	1.03	1.31	1	5	0	0	100%	1
8DB5_GDP_D_201	89%	46%	0.083	0.963	0.9	1.22	1	2	0	0	100%	1
8DB5_GDP_B_201	84%	41%	0.095	0.957	0.94	1.38	2	4	1	0	100%	1
8DB5_GDP_H_201	83%	43%	0.095	0.953	1.06	1.18	2	3	0	0	100%	1
8DCO_GDP_B_201	96%	44%	0.064	0.975	0.98	1.21	2	3	0	0	100%	1
1RRG_GDP_A_183	100%	19%	0.036	0.997	2.05	1.56	7	3	0	0	100%	1
5YMX_GDP_A_301	100%	54%	0.038	0.994	0.92	0.85	1	-	2	0	100%	1
8CNJ_GDP_B_201	100%	56%	0.04	0.992	0.91	0.77	1	-	0	0	100%	1
5UQW_GDP_A_1002	100%	47%	0.04	0.99	1.04	1.01	2	2	0	0	100%	1
2PHN_GDP_A_2696	100%	45%	0.046	0.99	1.08	1.08	1	2	0	0	100%	1

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.