PGV: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE
PGV is a Ligand Of Interest in 7D5W designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 7D5W_PGV_A_611 | 78% | 45% | 0.128 | 0.972 | 0.9 | 1.2 | 3 | 4 | 1 | 0 | 100% | 1 |
| 7D5W_PGV_C_306 | 77% | 55% | 0.126 | 0.978 | 0.84 | 0.9 | 2 | 3 | 2 | 0 | 94% | 0.9412 |
| 7D5W_PGV_P_305 | 76% | 54% | 0.135 | 0.973 | 0.76 | 1 | 2 | 1 | 1 | 0 | 100% | 1 |
| 7D5W_PGV_N_612 | 74% | 48% | 0.134 | 0.964 | 0.89 | 1.12 | 3 | 6 | 1 | 0 | 100% | 1 |
| 7D5W_PGV_A_608 | 14% | 74% | 0.229 | 0.844 | 0.41 | 0.58 | - | - | 1 | 0 | 67% | 0.6667 |
| 7D5W_PGV_N_610 | 14% | 48% | 0.276 | 0.832 | 0.96 | 1.06 | 2 | 3 | 3 | 0 | 100% | 1 |
| 7D5W_PGV_C_307 | 13% | 21% | 0.254 | 0.847 | 1.31 | 1.95 | 2 | 9 | 0 | 0 | 71% | 0.7059 |
| 7D5W_PGV_P_306 | 8% | 51% | 0.252 | 0.799 | 0.99 | 0.91 | 1 | 2 | 1 | 0 | 61% | 0.6078 |
| 5B1A_PGV_P_303 | 98% | 35% | 0.064 | 0.985 | 1.06 | 1.51 | 3 | 13 | 4 | 0 | 100% | 1 |
| 5X1B_PGV_C_302 | 95% | 52% | 0.078 | 0.981 | 0.92 | 0.93 | 2 | 4 | 0 | 0 | 100% | 1 |
| 5B1B_PGV_C_302 | 94% | 56% | 0.078 | 0.979 | 0.81 | 0.87 | 1 | 1 | 3 | 0 | 100% | 1 |
| 7YPY_PGV_P_302 | 94% | 54% | 0.079 | 0.978 | 0.79 | 0.99 | 2 | 2 | 1 | 0 | 100% | 1 |
| 7COH_PGV_C_267 | 93% | 49% | 0.087 | 0.983 | 0.87 | 1.09 | 3 | 3 | 0 | 0 | 100% | 1 |
| 5ZCQ_PGV_N_608 | 90% | 32% | 0.094 | 0.978 | 1.15 | 1.53 | 5 | 8 | 1 | 0 | 100% | 1 |
