5Y3J
NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG is a Ligand Of Interest in 5Y3J designated by the RCSB
Best-fitted instance in this entry | |
Other instances in this entry |
Best-fitted instance in this entry | |
Best-fitted PDB instances with same target (top 5) |
Best-fitted instance in this entry | |
Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
---|---|---|---|---|---|---|---|---|---|---|---|---|
5Y3J_NAG_B_1009 | 91% | 44% | 0.08 | 0.966 | 0.57 | 1.61 | - | 4 | 0 | 0 | 100% | 0.9333 |
5Y3J_NAG_A_1009 | 79% | 44% | 0.105 | 0.95 | 0.7 | 1.47 | - | 3 | 0 | 0 | 100% | 0.9333 |
5Y3J_NAG_A_1004 | 75% | 47% | 0.112 | 0.946 | 0.77 | 1.3 | - | 2 | 0 | 0 | 100% | 0.9333 |
5Y3J_NAG_A_1008 | 73% | 44% | 0.095 | 0.922 | 0.63 | 1.55 | - | 4 | 0 | 0 | 100% | 0.9333 |
5Y3J_NAG_B_1008 | 72% | 34% | 0.099 | 0.922 | 0.86 | 1.81 | 1 | 4 | 0 | 0 | 100% | 0.9333 |
5Y3J_NAG_B_1004 | 69% | 47% | 0.139 | 0.954 | 0.83 | 1.22 | 1 | 1 | 0 | 0 | 100% | 0.9333 |
5Y3J_NAG_A_1007 | 51% | 62% | 0.118 | 0.873 | 0.63 | 0.8 | - | - | 0 | 0 | 100% | 0.9333 |
5Y3J_NAG_B_1006 | 46% | 56% | 0.153 | 0.887 | 0.7 | 0.97 | - | 1 | 0 | 0 | 100% | 0.9333 |
5Y3J_NAG_B_1007 | 43% | 39% | 0.138 | 0.862 | 0.6 | 1.85 | - | 6 | 0 | 0 | 100% | 0.9333 |
5Y3J_NAG_A_1006 | 41% | 55% | 0.16 | 0.875 | 0.87 | 0.84 | - | - | 0 | 0 | 100% | 0.9333 |
5Y3J_NAG_B_1003 | 40% | 53% | 0.173 | 0.882 | 0.53 | 1.26 | - | 3 | 0 | 0 | 100% | 0.9333 |
5Y3J_NAG_A_1003 | 33% | 46% | 0.19 | 0.871 | 0.49 | 1.6 | - | 3 | 0 | 0 | 100% | 0.9333 |
5Y3J_NAG_B_1005 | 14% | 64% | 0.293 | 0.844 | 0.5 | 0.86 | - | - | 0 | 0 | 100% | 0.9333 |
5Y3J_NAG_A_1010 | 12% | 39% | 0.327 | 0.859 | 0.88 | 1.58 | - | 4 | 0 | 0 | 100% | 0.9333 |
5Y3J_NAG_A_1005 | 9% | 66% | 0.31 | 0.804 | 0.57 | 0.73 | - | - | 0 | 0 | 100% | 0.9333 |
5Y3L_NAG_A_1008 | 88% | 50% | 0.092 | 0.968 | 0.43 | 1.47 | - | 3 | 0 | 0 | 100% | 0.9333 |
3WPC_NAG_A_902 | 73% | 49% | 0.1 | 0.928 | 0.8 | 1.16 | 1 | 2 | 0 | 0 | 100% | 0.9333 |
5Y3K_NAG_B_1008 | 72% | 63% | 0.127 | 0.951 | 0.32 | 1.06 | - | 2 | 0 | 0 | 100% | 0.9333 |
3WPD_NAG_A_907 | 64% | 54% | 0.148 | 0.949 | 0.55 | 1.22 | - | 1 | 0 | 0 | 100% | 0.9333 |
3WPB_NAG_A_902 | 63% | 30% | 0.152 | 0.95 | 0.44 | 2.43 | - | 3 | 1 | 0 | 100% | 0.9333 |
1OC7_NAG_A_500 | 100% | 60% | 0.04 | 0.991 | 0.61 | 0.9 | - | 1 | 0 | 0 | 100% | 0.9333 |
1OC6_NAG_A_500 | 100% | 67% | 0.041 | 0.988 | 0.46 | 0.8 | - | 1 | 0 | 0 | 100% | 0.9333 |
1UWC_NAG_A_262 | 100% | 54% | 0.046 | 0.99 | 0.81 | 0.95 | - | - | 0 | 0 | 100% | 0.9333 |
6ZE6_NAG_B_703 | 99% | 52% | 0.044 | 0.984 | 0.78 | 1.07 | - | 2 | 0 | 0 | 100% | 0.8667 |
6ZE2_NAG_B_704 | 99% | 56% | 0.042 | 0.979 | 0.73 | 0.95 | - | 1 | 0 | 0 | 100% | 0.9333 |